Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0864 ATGATGAACACAGCGAACGGCATGGTGTCTCCGTCGTCGACTTCAGCGGGTAACAACAACAACGCACAGTCGCCTGGTCTCAAGACCTATTTCAAAACCCCTGAAGGCCGATATAAGCTTCAATACGAGAAAACTCACCCTTCTGGTCTTCTTCATTACGCTCATGGCAAAACCGTTACTCAGGTAACCTTAGCACATCTTAAGGACAAGCCTTCGCCTTCAACCCCGACGACGGCGTCGTCTTCGAGTTTTAGTGCCGGTAGTGGGGTGCGGTCAGCGGCAGCTAGATTGCTGGGAGGAAGCAATGGAAGCCGAGCACTTAGTTTTGTTGGAGGCAATGGTGGCAGCAAGAGCAACGGGTTAAACAGTAGGATTGGTTCAATTGGTGCCTCGAGTTCAAGTAATGCAGTGGCTAATCCAAATTTTGATGGGAAAGGAACTTACTTGATATTCAATGTTGGGGATGCAATTTTCATAAGTGATTTGAATTCTCAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAATTCAAATCCCGTATGCCACGCATTTGATCAGGACTCTAAGGATGGGCATGATTTGCTCATTGGCTTGAGCTCTGGGGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGGTTCTGTCAATAACAGCCGTTGCACTTGTATTTCTTGGGTTCCTGGAGTTGATGGTGCTTTTGTTGTTGCTCATGCGGATGGGAATTTGTTCGTATATGAAAAGAACAAAGATGGCGCTGGTGATTCTTCATTCCCAGTTATCAAAGATCAAACTCAGTTTTCTGTTTCCCATGCACGGTATAGCAAGAGTAATCCAGTAGCCAGATGGCATATATGCCAGGGATCGATTAACAGTATTTCTTTCTCAAATGATGGGGCATACTTAGCTACTGTTGGACGAGATGGGTATTTGCGAGTGTTTGATTACTTGAAAGAACAACTTATATGTGGTGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAGCATGGATGGAAAATATATTTTGACGGGAGGAGAAGATGATTTGGTTCAGGTTTGGAGTATGGAAGATCGCAAAGTTGTGGCATGGGGTGAGGGACATAACTCATGGGTCAGTGGAGTGGCATTTGACTCGTATTGGTCATCACCAAATTCAAATGACAATGGAGAGACCATTATGTATCGGTTTGGTTCCGTTGGTCAGGACACTCAACTGCTTCTATGGGACCTGGAAATGGATGAGATTGTAGTGCCTTTAAGGCGATGCCCACCTGGTGGATCACCGACATACAGTACTGGAAGCCAGTCATCCCACTGGGACAATGTTGTCCCATTGGGTACCTTGCAACCTGCTCCAAGTATGCGAGATGTTCCGAAAATCTCTCCGCTGGTTGCTCACCGGGTGCATACTGAACCACTCTCTGGCTTGATATTTACCCAGGAATCCGTACTTACTGCCTGCCGTGAGGGCCACATAAAAGTCTGGATGAGACCTGGAGCTCCTGAGAGCCAACCAAGCAACTCGGAAACATCGTTAGCTACTAGTCTCAAGGAGAAGCCTTTACTTTCGAGCAAGCTCAGCAATTCTAGTTACAAATAA 1656 0.4583 MMNTANGMVSPSSTSAGNNNNAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPSPSTPTTASSSSFSAGSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGLNSRIGSIGASSSSNAVANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDSKDGHDLLIGLSSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTCISWVPGVDGAFVVAHADGNLFVYEKNKDGAGDSSFPVIKDQTQFSVSHARYSKSNPVARWHICQGSINSISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRCPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKVWMRPGAPESQPSNSETSLATSLKEKPLLSSKLSNSSYK* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0864 551 MobiDBLite consensus disorder prediction 515 551 - -
Lja1g0864 551 Gene3D - 16 522 IPR015943 GO:0005515
Lja1g0864 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 382 IPR001680 GO:0005515
Lja1g0864 551 Pfam WD domain, G-beta repeat 303 331 IPR001680 GO:0005515
Lja1g0864 551 Pfam WD domain, G-beta repeat 348 373 IPR001680 GO:0005515
Lja1g0864 551 PANTHER WD REPEAT PROTEIN 3 549 - -
Lja1g0864 551 MobiDBLite consensus disorder prediction 520 551 - -
Lja1g0864 551 SMART WD40_4 292 331 IPR001680 GO:0005515
Lja1g0864 551 SMART WD40_4 217 263 IPR001680 GO:0005515
Lja1g0864 551 SMART WD40_4 334 373 IPR001680 GO:0005515
Lja1g0864 551 SMART WD40_4 478 515 IPR001680 GO:0005515
Lja1g0864 551 SMART WD40_4 376 428 IPR001680 GO:0005515
Lja1g0864 551 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 3 549 - -
Lja1g0864 551 MobiDBLite consensus disorder prediction 1 28 - -
Lja1g0864 551 SUPERFAMILY WD40 repeat-like 155 514 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0864 308 435 Miscellaneous Gene Families AT5G08390 22.656 5.29e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0864 K24741 - gmx:100782580 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0864 1 8505538 8511744 Lja1g0864 1 8505538 8511744 ECH