Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0833 ATGGGAGAGAAAACGGAGCAGGCGAAGAACAATGAGAACGCCGTCGTTTTGAAACTCGACTTGCATTGTGAAGGATGCGTTAAGAAAATCAAACGAGCCCTTCGCAATTTTAACGGCGTGGAAGATGTGAAGGCCGATTTATCCGGTAACAAACTAACGGTCATCGGAAAAGTGGACCCTACCAAGGTGCGGGATAAACTAGCGGAGAAAACTAACAAAAACGTTGAGCTTGTTTCTTCTCCGCCTAAAAAAGACGCCGCCGGTGATAAACCACCGCCGGAGAAGAAGCCGGAGGAGAAACCGAAAACTGACGATAAAAAGCCGGAAGAAGAAAAAACGAAACCCGATGAGAAAAAGGCGGAAGAGAAAACCAAAACCCCTAAACAGAGCACGGTGGTGATGAAGATCAGGTTGCACTGTGACGGTTGCATTCACAAAATTGAGAAGATTGTCCTTAAGGCAAAAGGAGTTGAGTCGGTGAATATTGAGGGAGGAGGGAAGGATTTGGTGACGGTGAAGGGAACGGTGGAGGCGAATGAGTTGGTGCCGTATTTGAGGGAGAAGCTGAAACGGAACGTGGAGGTGGTGGTGGTTCCGCCGAAGAAAGACGATGAAAAGAAAGAGAACAAACAAGGTGGCGGTGGTGGTGAGAAGAAAGAGGGTGGTGGCGATAAGAAAGAGGTTGAAAGCGGAACAACGAAGGTGGAGGTGAACAAAATGGAGCACTACGGGTATGGGTATGCACAGCAACCTCCGATGTACTGGCACGGCGGGTATGCGCCGGGTGAGAGTAGCGGTGGCGGCGGCGGTGGTGGTTATGCGGTGGAGGGTCAAGGTGGGTATTGGAATGATGGAGGGTATAATGGTAATAGCAACTACTACCAGCATGGGTATGTGAACCAGCAACAACAAGGAGGAGGGTATATGGTGGAGCAACCCCCACCGTACTATTTGCACCAGCAGCATCCTCTTCCTCCACAGATGTTTAGTGATGAGAATCCCAATGCATGTTCCGTGATGTGA 1023 0.4976 MGEKTEQAKNNENAVVLKLDLHCEGCVKKIKRALRNFNGVEDVKADLSGNKLTVIGKVDPTKVRDKLAEKTNKNVELVSSPPKKDAAGDKPPPEKKPEEKPKTDDKKPEEEKTKPDEKKAEEKTKTPKQSTVVMKIRLHCDGCIHKIEKIVLKAKGVESVNIEGGGKDLVTVKGTVEANELVPYLREKLKRNVEVVVVPPKKDDEKKENKQGGGGGEKKEGGGDKKEVESGTTKVEVNKMEHYGYGYAQQPPMYWHGGYAPGESSGGGGGGGYAVEGQGGYWNDGGYNGNSNYYQHGYVNQQQQGGGYMVEQPPPYYLHQQHPLPPQMFSDENPNACSVM* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0833 340 Pfam Heavy-metal-associated domain 133 193 IPR006121 GO:0046872
Lja1g0833 340 Pfam Heavy-metal-associated domain 20 70 IPR006121 GO:0046872
Lja1g0833 340 Gene3D - 128 204 - -
Lja1g0833 340 Gene3D - 10 85 - -
Lja1g0833 340 CDD HMA 138 191 IPR006121 GO:0046872
Lja1g0833 340 SUPERFAMILY HMA, heavy metal-associated domain 130 187 IPR036163 GO:0046872
Lja1g0833 340 CDD HMA 21 76 IPR006121 GO:0046872
Lja1g0833 340 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 11 340 - -
Lja1g0833 340 MobiDBLite consensus disorder prediction 87 128 - -
Lja1g0833 340 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 11 340 IPR044594 GO:0046872
Lja1g0833 340 MobiDBLite consensus disorder prediction 200 231 - -
Lja1g0833 340 ProSiteProfiles Heavy-metal-associated domain profile. 21 69 IPR006121 GO:0046872
Lja1g0833 340 SUPERFAMILY HMA, heavy metal-associated domain 15 76 IPR036163 GO:0046872
Lja1g0833 340 MobiDBLite consensus disorder prediction 72 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0833 Lja-Chr1 8139427 8141315 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0833 - - lja:Lj1g3v4591190.1 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0833 1 8139427 8141315 Lja1g0833 1 8139427 8141315 ECH