Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0832 ATGCGTTTCCAACCAGCGAACCCGAGCTTCACCACCATCACCATGCCTGCAACTCCACTATCATCTTCCTTCCTCACCCTGCAACCGCGCTTCAACTCCTACATCAACCCTCTCTTCCGTTCACTCACCTACCAACTCAATGGCAACTTCTCCACAGTCAGACTCCACTCCGCACTTCCCGGCGCGGCGGAGACCGACTCTCCCACCGGCGGCCGAACCGGCGCCTTAACTCCCGGCCCTTCTGTCCCCCGTGACGTGCAGAAAATCGACGTCAACCCTCCCAAGGGGACACGTGACTTCCCGCCTGAAGACATGCGCTTGCGCAACTGGCTCTTCAACCATTTCAAAGAGGTTTCACGGTTGTATGGATTTGAGGAGGTTGATTTTCCAGTGCTTGAGTCGGAGGCATTGTATACTAGGAAAGCAGGGGAGGAGATTAAGGACCAGCTGTATTGTTTTGAAGATCGGGGTAACCGTCGTGTTGCGTTGAGGCCTGAACTTACTCCTTCTTTGGCAAGACTGGTGATACAGAAAGGGAAGTCTGTATCACTACCATTGAAGTGGTTCACTGTGGGACAATGTTGGCGGTATGAGAGAATGACAAGGGGGCGTCGCCGTGAGCACTACCAATGGAACATGGATATCATTGGTGTTCCTGGTGTTATGGCTGAAGCAGAGCTTATATCTTCTATTGTCACTTTGTTCAAGCGAATAGGAATTACGGAATCAGATGTTGGATTTAAGGTTTCTAGTCGAAAGGTTCTTCAGGAAGTATTAAGGTGTTATTCAATACCTGAAAATTTATTTGGCAAGGTCTGCATCATTATTGATAAGATTGAGAAAATTCCAATTGATGAGATAAAGAAAGAGTTGAAAGCTGCTGGTCTATCACAAGAGGCTGTCCTGGAGCTATTGCAAGTCCTTTCTGTAAAGTCATTGACCGAGTTAGAAGAGAGACTCGGAAACAGTGGGGAAGCAATTGCTGATCTCAAAGAGCTATTCTCACTTGCTGAAAAGTTTGGTTACTCTAAATGGCTTCAATTTGATGCGTCAGTTGTTCGTGGCCTTGCATATTACACTGGCATTGTATTCGAGGGTTTTGACCGACAAGGAAAGCTCCGAGCTATCTGTGGTGGGGGGCGATATGATCATCTGTTCTCAACTTTTGGGGCTGATGACGTTGCTGCTTGTGGTTTTGGATTTGGTGATGCAGTCGTAGTGGAATTGCTGAAAGAGAAGGGCCTGCTACCAGAACTCAGCATGCAAATAGATGACATTGTTTGTGCCTTGGATGAAGACCTTCAAGGATATGCTGCTTTGGTTGCAAACATTCTCAGAGAAAAAGGACAGAGTGTTGACTTGGTTTTGGAAAGCAAACCACTTAAATGGGTTTTTAAACGAGCAGCCCGAACAAATGCTGAGCGACTGGTATTAGTGGGAAATTCTGAGTGGCAAAAGGGTGTTGTTGGTGTCAAAATTCTATCTACTGGTGAGCAGTATGAGGTTAAACTGGATGATCTAAAGTAA 1527 0.4669 MRFQPANPSFTTITMPATPLSSSFLTLQPRFNSYINPLFRSLTYQLNGNFSTVRLHSALPGAAETDSPTGGRTGALTPGPSVPRDVQKIDVNPPKGTRDFPPEDMRLRNWLFNHFKEVSRLYGFEEVDFPVLESEALYTRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFTVGQCWRYERMTRGRRREHYQWNMDIIGVPGVMAEAELISSIVTLFKRIGITESDVGFKVSSRKVLQEVLRCYSIPENLFGKVCIIIDKIEKIPIDEIKKELKAAGLSQEAVLELLQVLSVKSLTELEERLGNSGEAIADLKELFSLAEKFGYSKWLQFDASVVRGLAYYTGIVFEGFDRQGKLRAICGGGRYDHLFSTFGADDVAACGFGFGDAVVVELLKEKGLLPELSMQIDDIVCALDEDLQGYAALVANILREKGQSVDLVLESKPLKWVFKRAARTNAERLVLVGNSEWQKGVVGVKILSTGEQYEVKLDDLK* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0832 508 MobiDBLite consensus disorder prediction 61 100 - -
Lja1g0832 508 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 96 417 IPR006195 -
Lja1g0832 508 PANTHER HISTIDINE--TRNA LIGASE, MITOCHONDRIAL-RELATED 87 508 - -
Lja1g0832 508 CDD HTH_XRE 285 343 IPR001387 -
Lja1g0832 508 Gene3D - 416 508 IPR036621 -
Lja1g0832 508 PANTHER HISTIDYL-TRNA SYNTHETASE 87 508 IPR004516 GO:0005737
Lja1g0832 508 Gene3D Bira Bifunctional Protein; Domain 2 87 414 IPR045864 -
Lja1g0832 508 TIGRFAM hisS: histidine--tRNA ligase 93 503 IPR015807 GO:0004821|GO:0005524|GO:0006427
Lja1g0832 508 SUPERFAMILY Class II aaRS ABD-related 423 507 - -
Lja1g0832 508 PIRSF His-tRNA_synth 87 508 IPR004516 GO:0005737
Lja1g0832 508 Hamap Histidine--tRNA ligase [hisS]. 89 508 IPR015807 GO:0004821|GO:0005524|GO:0006427
Lja1g0832 508 Pfam Histidyl-tRNA synthetase 96 400 IPR041715 -
Lja1g0832 508 Coils Coil 313 333 - -
Lja1g0832 508 Pfam Anticodon binding domain 427 507 IPR004154 -
Lja1g0832 508 CDD HisRS-like_core 104 411 IPR041715 -
Lja1g0832 508 SUPERFAMILY Class II aaRS and biotin synthetases 93 414 IPR045864 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0832 K01892 - gmx:100793186 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0832 1 8115748 8127483 Lja1g0832 1 8115748 8127483 ECH