Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0819 ATGGCAAGTCCGTCGGAATTTCACGACCGCGAAATCGCAGCCTCATATCTCGCGGCAGCAGATTTCAGAGTCTATGACAACGACGGCGGCGAAGAAGAAGACGATGAAGAGTACGTTACCTTTTCGCCGCCGTCGTCTAGGGTTTTACCCGACCTTCACCTGAGTCCTACCTACGACTTCTTTGAAGGAATCATCATCCCTGACTGGGAACCGCTGTTTTACGCTCAAGAGGATGGGAACAAACGCCGGAGAACCGATGAAGGAGAGGGCTCATCTTCACCCATTGGTAGTCAAGGGAACGAGCTCAGCGACACTGACATTGACGGCTTCATTTGCCCTATTTGTTTCGACGTTTGGACCAGTAGCGGTGAACATCAAATCTGTTGTCTTCCTTGTGGACATATATATGGTATGTCTTGCATCAATAAATGGATTCGCCGGGAAAAATATATGGCCAAGTGTCCTCAATGTAATAAGTATTGCTCGTTGAAGGATGTGAGGAAACTCTATGTTCCACGCGTGATTGCTGTAGATGAAGAAGTTCATAAGCGAATTCGGTCACTCGAGGACAAATGTGCTGCCCTTGAAAGCAAGGATGGTGATTGGCGCTTGAAAGAAGCTAAATGGAAAGGGAGAGAAGCTGCATTGAATATTGAAGTGCAGAGCCTCAAAGAGAGATATGAACGTGGTAATCATCTTTCAAGAACGTGGCAATCTGAACTGATGGATGGCAATGTGTATTCTGAACAGAGATATGAACGTGAGCACAACCAGGGCCCGAAGTCCCATGAAAAAAAACCGTTTTGCAATTTTAAATGTCAGAATGTGTTACGTGTGGATGGTGCACGTCTATTTGATATGGACACTTCTAATGATGTTCTATTAATAGCACGAAAACCAAAAGCATTCGGTGGAGTACAATTGCTAACCAAAATGAGCTTGATATCTCCATTTGAGATGGAGGATATCTTTTTGTCTTCCACTACATGTGCTATTAGAGACCTGCATATTTCTCCTTCTAACAGTAGACTGGCTCTCTATGCTTCAGAAGGGAAGAAATTATCAGTGCTCAGCTTGGACAGTAGCGACATTGTTGTCAATTATCGTCTACAGAATCCTGCTTGGTCATGCTCATGGGATCTCAACAGTACGAATTATATATATGCGGGACTACAGAATGGATCTGTGATGGTGTTTGATATGCGCCAAACTTCAGGACCTTTAAAATCTTTAGTTGGGTTGACTAGCTACCCTGTTCACACTGTACAATCTCTTTCACAAACTTCAAGCCTTCATTCTGATGCTAGAACCGTCCTATCCGCATCTGCCAGTGGCATTTGTCAGTGGAACATTGATTCTGAAGATCGGCCGATTGTGGTTCCTGAAACTGACAATCAAGGAGAGTGTATTTCCCTTGCCTATTGCTCTAGTAGTGATCACATTGTTGGTTCCTACCGTCCAAAGTATGACAAGTCAAAGGACTATCCAATGTTTGATATGTCGAAGGACCGCCAAATATTTGACATGTCGGAGGGTGTGCCTCTTTCTCCACCATTGCCTACTCCTCAAGTTACTGTACAACGAGACCGGTGCTCTCATGTCTTGTACAAGGGAATGGGCAGTCATGATTTCCAGAAGATGGGTTACACATATGGCAATTTATGGAAAGATCGACTGCCAAAATGTGCAGTTATAGACATGAAGAATCAGGGTACATTCTTTGCATCTGGAGATCAATTTTCAAGGGATTTGCTCTTGTATGAGTTGCCATCTTTCAGAGTTGTTGAGCAATTCGACATGCCAGCTCAGGCCCGTGATGTTAGGTACTCAACTAGCCATGGAGTACTTGGTTGTTTAAGTGATAACACATTAAAACTTTTCAAAAGAAAGGAAGAAAGTGAGAGTGCATGA 1911 0.438 MASPSEFHDREIAASYLAAADFRVYDNDGGEEEDDEEYVTFSPPSSRVLPDLHLSPTYDFFEGIIIPDWEPLFYAQEDGNKRRRTDEGEGSSSPIGSQGNELSDTDIDGFICPICFDVWTSSGEHQICCLPCGHIYGMSCINKWIRREKYMAKCPQCNKYCSLKDVRKLYVPRVIAVDEEVHKRIRSLEDKCAALESKDGDWRLKEAKWKGREAALNIEVQSLKERYERGNHLSRTWQSELMDGNVYSEQRYEREHNQGPKSHEKKPFCNFKCQNVLRVDGARLFDMDTSNDVLLIARKPKAFGGVQLLTKMSLISPFEMEDIFLSSTTCAIRDLHISPSNSRLALYASEGKKLSVLSLDSSDIVVNYRLQNPAWSCSWDLNSTNYIYAGLQNGSVMVFDMRQTSGPLKSLVGLTSYPVHTVQSLSQTSSLHSDARTVLSASASGICQWNIDSEDRPIVVPETDNQGECISLAYCSSSDHIVGSYRPKYDKSKDYPMFDMSKDRQIFDMSEGVPLSPPLPTPQVTVQRDRCSHVLYKGMGSHDFQKMGYTYGNLWKDRLPKCAVIDMKNQGTFFASGDQFSRDLLLYELPSFRVVEQFDMPAQARDVRYSTSHGVLGCLSDNTLKLFKRKEESESA* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0819 636 Pfam Ring finger domain 112 158 IPR001841 -
Lja1g0819 636 Gene3D - 281 502 IPR015943 GO:0005515
Lja1g0819 636 ProSiteProfiles Zinc finger RING-type profile. 112 158 IPR001841 -
Lja1g0819 636 SMART ring_2 112 157 IPR001841 -
Lja1g0819 636 SUPERFAMILY WD40 repeat-like 326 627 IPR036322 GO:0005515
Lja1g0819 636 Coils Coil 178 198 - -
Lja1g0819 636 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 31 628 - -
Lja1g0819 636 SUPERFAMILY RING/U-box 106 164 - -
Lja1g0819 636 MobiDBLite consensus disorder prediction 81 102 - -
Lja1g0819 636 CDD mRING-C3HGC3_RFWD3 108 158 - -
Lja1g0819 636 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 223 IPR013083 -
Lja1g0819 636 PANTHER RFWD3 PROTEIN 31 628 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0819 Lja-Chr1 7968712 7973755 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0819 K15691 - gmx:100818898 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0819 1 7968712 7973755 Lja1g0819 1 7968712 7973755 ECH