Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0803 ATGGCAACATCACTCGCTTCTCAACTCTCCGTCGGCCTCCGCCGCCCATCCCCCAAGCTCGATTCTCTCAATTCTCAATCCACCCATTCCCTCTTCCATTCCAATCTTCGCCTTCCAATCTCTTCTTCCAAACCCTCCCGCTCCGTCATCGCCATGGCTGGCTCTGGCAAGTTCTTTGTTGGAGGCAACTGGAAGTGTAATGGCACAAAAGACTCTATCAGCAAGCTTGTCGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGATGTTGTTGTTGCACCTCCCTTTGTGTACATCGATCAGGTGAAGAACTCCATTACAGATAGGATTGAAGTATCTGCCCAGAATTCTTGGGTGAGTAAAGGTGGTGCTTTCACTGGAGAAATCAGCGTGGAACAACTGAAAGACCATGGAGTCAAGTGGGTCATTCTTGGACATTCCGAGCGAAGACATATCATTGGAGAAAAAGATGAGTTTATAGGAAAGAAAGCTGCCTATGCTTTGACCGAGGGTCTTGGAGTGATTGCATGCATCGGGGAGTTGTTAGAAGAAAGGGAAGCTGGGAAAACATTTGATGTCTGTTTCCAGCAATTGAAGGCTTATGCAGATGCAGTGCCTAGTTGGGATAATATAGTCATTGCATATGAACCTGTCTGGGCCATTGGAACTGGCAAAGTGGCCTCGCCCGAGCAAGCTCAGGAAGTACACGCAGCTATTCGTGATTGGCTTCAAAAGAATGTCTCCGCTGAAGTTGCATCTAAAACGCGAATTATTTATGGAGGATCTGTGAATGGAGGCAACAGTTCTGAGCTTGCAAAGAAAGAAGATATTGATGGATTTCTTGTTGGAGGTGCTTCATTGAAGGGTCCTGAGTTTGCTACTATTATCAATTCAGTCACATCCAAAAAAGTTGCGGCTTGA 924 0.4632 MATSLASQLSVGLRRPSPKLDSLNSQSTHSLFHSNLRLPISSSKPSRSVIAMAGSGKFFVGGNWKCNGTKDSISKLVADLNSAKLEPDVDVVVAPPFVYIDQVKNSITDRIEVSAQNSWVSKGGAFTGEISVEQLKDHGVKWVILGHSERRHIIGEKDEFIGKKAAYALTEGLGVIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVASPEQAQEVHAAIRDWLQKNVSAEVASKTRIIYGGSVNGGNSSELAKKEDIDGFLVGGASLKGPEFATIINSVTSKKVAA* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0803 307 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 57 299 IPR000652 GO:0004807
Lja1g0803 307 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 6 305 - -
Lja1g0803 307 SUPERFAMILY Triosephosphate isomerase (TIM) 55 300 IPR035990 GO:0004807
Lja1g0803 307 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g0803 307 ProSitePatterns Triosephosphate isomerase active site. 215 225 IPR020861 GO:0004807
Lja1g0803 307 PANTHER TRIOSEPHOSPHATE ISOMERASE 6 305 IPR000652 GO:0004807
Lja1g0803 307 CDD TIM 58 298 IPR000652 GO:0004807
Lja1g0803 307 Hamap Triosephosphate isomerase [tpiA]. 56 299 IPR022896 GO:0004807|GO:0006096
Lja1g0803 307 Pfam Triosephosphate isomerase 59 299 IPR000652 GO:0004807
Lja1g0803 307 TIGRFAM tim: triose-phosphate isomerase 59 289 IPR000652 GO:0004807
Lja1g0803 307 Gene3D Aldolase class I 40 306 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0803 Lja-Chr1 7773462 7777470 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0803 K01803 - gmx:100799358 521.161