Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0798 ATGGTGAAAGCCTACCTCCGATACGAACCGGCGGCGGCGTTCGGAGTAATAGCCTCCGTGGACTCCAACATCACCTACGACTCCTCCGGCAAGCACCTCCTCTCTCCGGCACTCGAGAAGATCGCCGTCTGGCACGTGCGGCAAGGCATCTGCACCAAAACCCTAACCCCTCCGCCTCCCTCACGCGGTCCTTCTCCGGCAGTCACTTCCATCGCCTCCACTCCTTCCTCCTCACTGATTGCTGCTGGTTACGGTGATGGTAGCATAAGGATTTTGGATTCTGATAAGGGAACGTGTGAGACTACATTGAATGGACACAAAGGAGCTGTCACTGCTCTTCGTTACAACCAGGCTGGTTCGGTACTCGCTTCTGGTAGTAAGGATAATGATGTTATTTTGTGGGACGTGGTTGGTGAGACTGGGCTGTTTCGTCTTCGCGGCCATCGTGATCAGGTGACTGATGTTGTTTTTCTGAGTTCTGGGAAAAAACTTGTTAGTTCCTCTAAAGACAAGTTTTTGAGAGTGTGGGATCTTGATACACAGCACTGTATGCAAATTGTTTCTGGACATCATAGTGAAATATGGTCTGTAGATGTTGATCCAGGTGAAAGATACTTGGTCACTGGTTCTGCAGACAAGGAGCTTCGTTTTTATGGTATCAAGCATGATTCTGTGGATGGGGCGTCTGTAAATGGTGGTGATGATTCTTCAGTTAGCAGCAAATGGGATGTTTTGAGGCTGTTTGGTGAAATTCAGCGGCAAAGCAAGGATAGAGTGGCAACAGTGCAGTTTAACAAGTCAGGGAATTTGCTAGCTTGTCAAGTTGCAGGGAAGACAGTAGAAATATACCGAGTATTGGATGATTCTGAAGCAAAACGTAAAGCAAAACGCCGGGTTCACCGCAAAAAGGAAAAGAAACATGGCAAAGAGCCTTTGGAGGCAACTGAAAATGGACACAATAATAATGAGAACAAAGAAGATAATTCTACTGTCACTCATGGGACCATAGAAACAAGCAACCCCACTATTACTGTCCCTGATGTATTTAAGCTGCTGCATACTATTAGAGCTAGCAAAAAGATATGCTCCATTTCTTTCTGTCCGAGCACTCCAAAGAATTCACTGGCTGGTTTAGCATTGTCCTTGAACAATAATCTACTTGAGTTTTACTCCATTCAAAGTAGTGAAACAAATAAAACACTTGCTATTGATCTTCAAGGACACCGTTCTGATGTTAGAAGTGTCACACTTAGTTCGGACAACAGTTTTCTATTGTCAACCAGTCACAATGCAGTAAAGATTTGGAACCCAACCACAGGTTCTTGCCTAAGGACCATTGATTCTGGGTATGGACTGTGCAGTTTAGTCCTTCCAACTAACAAGTATGGACTTGTTGGAACTAAAGATGGAACTATTGAAATTATTGACATTGGAAGTGGCACTTGTCTTGAAGCAATTGAAGCTCATGGTGGCTCTCTGCGCTCAATTGCTGCCCTACCGGATAAAAATAGTTTTGTCACAGGAAGTGCAGATCATGATGTGAAGTTTTGGGAATACCAAATTAAGCAAAAACCCGGTCAAGCTACTAAGCAACTAGCTGTGTCAAATGTCAGGACTATGAAAATGAATGATGATGTTCTTGTGGTTGCAATAAGCCCTGATGCCAAATATATTGCCGTTGCTCTGTTAGATAGTACTGTGAAGGTTCACTTTGTAGACACATTCAAATTCTTCCTTTCATTATATGGCCACAAGCTGCCCGTTTTGTGCATGGATATTTCATCAGACGGAGATTTAATTGTGACTGGCTCTGCTGATAAAAATTTAAAAATTTGGGGTTTGGATTTTGGTGACTGTCATAAATCCCTTTTTGCACATGATGACAGTGTTATGGCAGTGAAATTTGTCCCAAAGACGCATTATGTGTTCAGTGTTGGAAAAGATCGCAGAGTAAATTATTGGGATGCTGATAAATTTGAGCGGTTGCTAACTCTTGAAGGGCATCATGCAGATATTTGGTGTCTTGCAATTAGTAATCGCGGTGACTTTATTGTTACTGGGTCTCATGATCGTTCAATCCGCCGCTGGGATCGCACTGAAGAGCAGTTTTTCCTTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAGAAGTTTGAGGCTGATCTTGATTATACATCTGAAAACAAGTATGCACCGAAGGAAGAAATACCAGAGGAGGGAGCTGTGGCCTTAGCTGGGAAAAAAACTGAGGAAACCCTTACTGCGACTGACTTAATTATTGAGAGATTGGACATTGCTGAAGCTGAAGATAAGCGTATTGCTGAACATCAGGAGGAGAAAAATAACATAAATATTGCTGCTTTCCAAGCAAATCCGCTTATGAATGGGCTTTCACCTTCTGATTATGTTCTAAGTGCATTTTCAAACGTTCACTCCAATGATTTGGAGCAAACATTAATGGCTTTACCATTTTCTGATGCTTTGAAGCTTATCTCATACTTGAAAGAATGGACTTCATATTCGGATAAGGTAGAACTTGTTTGCAGGATAGGCATACTGCTAGTACAGACACATCACAATCAGCTGTTTGCCACACCAGCTGCCATACCTCTCTTGACTGCTCTCCGTGAATATCAATGTGTCAAGGAATGGAAAGATAAGTGTGGTTATAACCTCGCAGCGATGTATCATATGCAGCAAATGATGGCTTCAAACTCAGAAGCTCCTTTCCATAACGCAAGATCAATGCTGCTAGAGGCTAAACAATCCAAACGCTCAGCAGAAAGGTCTGATACTGGATATGTGAGGCCGAAGAAGAAGAAGAAGACGACGTAA 2832 0.4301 MVKAYLRYEPAAAFGVIASVDSNITYDSSGKHLLSPALEKIAVWHVRQGICTKTLTPPPPSRGPSPAVTSIASTPSSSLIAAGYGDGSIRILDSDKGTCETTLNGHKGAVTALRYNQAGSVLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDVVFLSSGKKLVSSSKDKFLRVWDLDTQHCMQIVSGHHSEIWSVDVDPGERYLVTGSADKELRFYGIKHDSVDGASVNGGDDSSVSSKWDVLRLFGEIQRQSKDRVATVQFNKSGNLLACQVAGKTVEIYRVLDDSEAKRKAKRRVHRKKEKKHGKEPLEATENGHNNNENKEDNSTVTHGTIETSNPTITVPDVFKLLHTIRASKKICSISFCPSTPKNSLAGLALSLNNNLLEFYSIQSSETNKTLAIDLQGHRSDVRSVTLSSDNSFLLSTSHNAVKIWNPTTGSCLRTIDSGYGLCSLVLPTNKYGLVGTKDGTIEIIDIGSGTCLEAIEAHGGSLRSIAALPDKNSFVTGSADHDVKFWEYQIKQKPGQATKQLAVSNVRTMKMNDDVLVVAISPDAKYIAVALLDSTVKVHFVDTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNLKIWGLDFGDCHKSLFAHDDSVMAVKFVPKTHYVFSVGKDRRVNYWDADKFERLLTLEGHHADIWCLAISNRGDFIVTGSHDRSIRRWDRTEEQFFLEEEKEKRLEEKFEADLDYTSENKYAPKEEIPEEGAVALAGKKTEETLTATDLIIERLDIAEAEDKRIAEHQEEKNNINIAAFQANPLMNGLSPSDYVLSAFSNVHSNDLEQTLMALPFSDALKLISYLKEWTSYSDKVELVCRIGILLVQTHHNQLFATPAAIPLLTALREYQCVKEWKDKCGYNLAAMYHMQQMMASNSEAPFHNARSMLLEAKQSKRSAERSDTGYVRPKKKKKTT* 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0798 943 Pfam Dip2/Utp12 Family 800 896 IPR007148 -
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 697 IPR001680 GO:0005515
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 665 697 - -
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 581 615 - -
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 103 136 IPR001680 GO:0005515
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 103 136 - -
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 486 518 - -
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 221 - -
Lja1g0798 943 CDD WD40 99 518 - -
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 445 IPR001680 GO:0005515
Lja1g0798 943 SMART WD40_4 439 476 IPR001680 GO:0005515
Lja1g0798 943 SMART WD40_4 244 284 IPR001680 GO:0005515
Lja1g0798 943 SMART WD40_4 180 219 IPR001680 GO:0005515
Lja1g0798 943 SMART WD40_4 479 518 IPR001680 GO:0005515
Lja1g0798 943 SMART WD40_4 616 655 IPR001680 GO:0005515
Lja1g0798 943 SMART WD40_4 574 613 IPR001680 GO:0005515
Lja1g0798 943 SMART WD40_4 138 177 IPR001680 GO:0005515
Lja1g0798 943 SMART WD40_4 96 135 IPR001680 GO:0005515
Lja1g0798 943 SMART WD40_4 658 697 IPR001680 GO:0005515
Lja1g0798 943 SMART WD40_4 533 571 IPR001680 GO:0005515
Lja1g0798 943 SMART WD40_4 48 93 IPR001680 GO:0005515
Lja1g0798 943 SMART WD40_4 398 436 IPR001680 GO:0005515
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 221 IPR001680 GO:0005515
Lja1g0798 943 CDD WD40 405 697 - -
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 186 IPR001680 GO:0005515
Lja1g0798 943 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 66 677 IPR011047 -
Lja1g0798 943 Coils Coil 765 785 - -
Lja1g0798 943 Gene3D - 232 450 IPR015943 GO:0005515
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 486 518 IPR001680 GO:0005515
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 622 IPR001680 GO:0005515
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 623 664 IPR001680 GO:0005515
Lja1g0798 943 Gene3D - 451 647 IPR015943 GO:0005515
Lja1g0798 943 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 938 - -
Lja1g0798 943 MobiDBLite consensus disorder prediction 919 943 - -
Lja1g0798 943 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Lja1g0798 943 PRINTS G protein beta WD-40 repeat signature 600 614 IPR020472 -
Lja1g0798 943 PRINTS G protein beta WD-40 repeat signature 122 136 IPR020472 -
Lja1g0798 943 ProSitePatterns Trp-Asp (WD) repeats signature. 122 136 IPR019775 -
Lja1g0798 943 MobiDBLite consensus disorder prediction 920 937 - -
Lja1g0798 943 MobiDBLite consensus disorder prediction 293 338 - -
Lja1g0798 943 Gene3D - 10 221 IPR015943 GO:0005515
Lja1g0798 943 MobiDBLite consensus disorder prediction 324 338 - -
Lja1g0798 943 ProSitePatterns Trp-Asp (WD) repeats signature. 164 178 IPR019775 -
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 180 - -
Lja1g0798 943 MobiDBLite consensus disorder prediction 306 323 - -
Lja1g0798 943 Pfam WD domain, G-beta repeat 481 517 IPR001680 GO:0005515
Lja1g0798 943 Pfam WD domain, G-beta repeat 405 436 IPR001680 GO:0005515
Lja1g0798 943 Pfam WD domain, G-beta repeat 143 177 IPR001680 GO:0005515
Lja1g0798 943 Pfam WD domain, G-beta repeat 182 218 IPR001680 GO:0005515
Lja1g0798 943 Pfam WD domain, G-beta repeat 579 612 IPR001680 GO:0005515
Lja1g0798 943 Pfam WD domain, G-beta repeat 63 91 IPR001680 GO:0005515
Lja1g0798 943 Pfam WD domain, G-beta repeat 97 135 IPR001680 GO:0005515
Lja1g0798 943 Pfam WD domain, G-beta repeat 662 697 IPR001680 GO:0005515
Lja1g0798 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 623 655 - -
Lja1g0798 943 Gene3D - 648 710 IPR015943 GO:0005515
Lja1g0798 943 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 938 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0798 578 706 Miscellaneous Gene Families AT5G08390 27.132 1.41e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0798 K14556 - gmx:100775810 1530
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0798 1 7726005 7734150 Lja1g0798 1 7726005 7734150 ECH