Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0797 ATGGCTTTCCCTTCGGGAGCCCTGATCCTGAGCTCATCATTAATGCTCATTCTTGTTGCATTTCCAGTTCCTGATGTTCATGCAAACTCATGGAGACATGCAGCTCCCAACGTTGCTGGTGGAGGAGGGAATATACGTAACAAGGCGCAGGCTTCCTCCAAGCACCATCGCCCTAAGTTTCAGCCTAGCCCATGGAAGGATGCTCATGCTACCTTCTATGAGGGTGACTCTGGATCATTTGGAGGAGCATGTGGGTATGAGGATGTGGTTAAAGATGGGTATGGGCTTGACACGGCAGCAGTGAGCTCAGTTTTGTTCCAAGAGGGCAAGATATGCGGGGCATGTTTTGAGATCAAATGTGTAAACTCTCCTCAGTGGTGTATTCCAGGCCAGCCGTCTATAACTGTCACTGCAACAAACCTTTGCCCTCCCAATTATGCTCAAGGAAATGATAATGGAGGATGGTGCAACCCACCACGTGAGCACTTTGATTTAGCCAAACCTGCATATCTCAAAATTGCTGAATACAAAGGTGGCATTGTCCCAGTCCAATATCGCAGGGTACCATGTGCTAGGAAAGGTGGTATTCGATTCACTGTTACAGGAAATCCATACTTCAATCTAGTAAAAGTGTGGAATGTTGGAGGAGCAGGGGATATCACACAATTACAGGTGAAGGGTGATAAAAAACTGAAATGGACAGATTTGAAGAGAAATTGGGGTGAGAAATGGGAGACTAATGCCATGTTAGTGGGAGAGTCATTGACATTCAGGGTCAGGGCAAGTGATGGAAGGTACTCTACAGCATGGAAAGTTGCCCCAAAAGATTGGCAGTTTGGTCAGACCTTTGAAGGCAAAAACTTCCCATAA 870 0.4644 MAFPSGALILSSSLMLILVAFPVPDVHANSWRHAAPNVAGGGGNIRNKAQASSKHHRPKFQPSPWKDAHATFYEGDSGSFGGACGYEDVVKDGYGLDTAAVSSVLFQEGKICGACFEIKCVNSPQWCIPGQPSITVTATNLCPPNYAQGNDNGGWCNPPREHFDLAKPAYLKIAEYKGGIVPVQYRRVPCARKGGIRFTVTGNPYFNLVKVWNVGGAGDITQLQVKGDKKLKWTDLKRNWGEKWETNAMLVGESLTFRVRASDGRYSTAWKVAPKDWQFGQTFEGKNFP* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0797 289 MobiDBLite consensus disorder prediction 38 65 - -
Lja1g0797 289 PANTHER EXPANSIN-A15 36 288 IPR002963 GO:0009664
Lja1g0797 289 SUPERFAMILY PHL pollen allergen 192 285 IPR036749 -
Lja1g0797 289 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Lja1g0797 289 PRINTS Expansin/Lol pI family signature 178 194 IPR007118 GO:0005576
Lja1g0797 289 PRINTS Expansin/Lol pI family signature 271 285 IPR007118 GO:0005576
Lja1g0797 289 PRINTS Expansin/Lol pI family signature 64 79 IPR007118 GO:0005576
Lja1g0797 289 PRINTS Expansin/Lol pI family signature 102 120 IPR007118 GO:0005576
Lja1g0797 289 Pfam Lytic transglycolase 98 185 IPR009009 -
Lja1g0797 289 Gene3D - 194 288 IPR036749 -
Lja1g0797 289 Gene3D - 48 191 IPR036908 -
Lja1g0797 289 PANTHER EXPANSIN-A32 36 288 - -
Lja1g0797 289 Pfam Expansin C-terminal domain 196 274 IPR007117 -
Lja1g0797 289 PRINTS Expansin signature 93 107 IPR002963 GO:0009664
Lja1g0797 289 PRINTS Expansin signature 194 206 IPR002963 GO:0009664
Lja1g0797 289 PRINTS Expansin signature 134 144 IPR002963 GO:0009664
Lja1g0797 289 PRINTS Expansin signature 271 287 IPR002963 GO:0009664
Lja1g0797 289 PRINTS Expansin signature 170 183 IPR002963 GO:0009664
Lja1g0797 289 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Lja1g0797 289 PRINTS Expansin signature 242 263 IPR002963 GO:0009664
Lja1g0797 289 PRINTS Expansin signature 120 131 IPR002963 GO:0009664
Lja1g0797 289 PRINTS Expansin signature 153 170 IPR002963 GO:0009664
Lja1g0797 289 SUPERFAMILY Barwin-like endoglucanases 64 213 IPR036908 -
Lja1g0797 289 SMART dpbb_1 98 185 IPR007112 -
Lja1g0797 289 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 205 285 IPR007117 -
Lja1g0797 289 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 81 195 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0797 Lja-Chr1 7723493 7725501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0797 64 288 Miscellaneous Gene Families AT5G02260 63.436 5.74e-112 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0797 - - gmx:100800424 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0797 1 7723493 7725501 Lja1g0797 1 7723493 7725501 ECH