Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0777 ATGAAGCTCCTTGAGAAGGATATTACCCTAAACCAGTCGGGTAGTGTGAAGGTGATTGCGGAAGACCCCGATGACTTATGGCTCCTCTACAACCTCATTTCCAGTGGTGACACCGTCACCGCCGACACCACACGCAAGGTCCACCTCCAGTCATCCACCAAGAGCACAGCCGCATCACGCGTCAAGCTCACACTCCACCTCAAGGTAACGCGCCGCGACTTCCACAAAGACTCCTCCACCCTCCGCATCCACGGCCGCAACCTCGAGCCCAACCAATATGTTTCTGCAGGATCCTTCCACACGTTCACCCTCGAAACAAATAACCCCTTTGAGCTTCACAAGAAGCTATGGAACCCCCAAGCCATCGAAATCTTAAACGAAAGCACTAAAAATCTCACATGTTCTTCTGATTCTTCCAATGCTGACATTGTTGTTGTTCCTCTTCAACAAAACCAAGCTGAGATATACTTGCTTACAAAAGGGATTACCACACGTTGTTCCAAGGTTGAAGCTTCACCATCTTCTTCACATTCACAAGCACTGAGAAAAGCTTCCTTTAACGTGTTCTTCCGTGAAGTTTTTGTCGATTTTGTGAAGTGCGTGGATTTTAATGTGGTTAGGAGTGTGGTGATAGCGAGCGATAATGCGTCAAGGAAGAGAAAGGGAGAGTTTCATAAGTTTTTGTTGTCAGAAGCTAGGAGGTTGAGGATGAGGTGGATAGAGGAGAACAAGACATGTGTCGTGGTTGTGGGGCCCGGGTGTGGTGATTTGAGGGACGTTTTGGGTGACGTGGCGGTGATGAATGTGATAAGGGAGAGCAAGGTAGGGTTGGAGATTAGGGTTTGTAAGGAGTTGTGGGATATGGTGTGTAACGGCTCAGATCGCGTGTGTTATGGTCCAAGGGTTGTGGAGAGTGCGCAGGAGATGAGGGCTATTGAGACCCTTTTGATAAGTGATGAACTTTATAGGAGTGAAGAGACTGGGGTGAGGTTAAAGTATGAGGGTTTGGTGAGAGCAGTGAAGGACGGTGGAGGAAAGGCTTTGGTGTATTCCTCCATGCATGTCTCAGCACCGCATCTTGCTCAGCTCACGGGTGTTGCTGCTATTCTAAGGTTTCCTTTACCTGATCTTGAAGACATGGAGGATGTTGTTTAA 1155 0.4823 MKLLEKDITLNQSGSVKVIAEDPDDLWLLYNLISSGDTVTADTTRKVHLQSSTKSTAASRVKLTLHLKVTRRDFHKDSSTLRIHGRNLEPNQYVSAGSFHTFTLETNNPFELHKKLWNPQAIEILNESTKNLTCSSDSSNADIVVVPLQQNQAEIYLLTKGITTRCSKVEASPSSSHSQALRKASFNVFFREVFVDFVKCVDFNVVRSVVIASDNASRKRKGEFHKFLLSEARRLRMRWIEENKTCVVVVGPGCGDLRDVLGDVAVMNVIRESKVGLEIRVCKELWDMVCNGSDRVCYGPRVVESAQEMRAIETLLISDELYRSEETGVRLKYEGLVRAVKDGGGKALVYSSMHVSAPHLAQLTGVAAILRFPLPDLEDMEDVV* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0777 384 Gene3D eRF1 domain 2 141 270 IPR042226 -
Lja1g0777 384 PANTHER PELOTA 1 381 IPR004405 GO:0070481|GO:0070966|GO:0071025
Lja1g0777 384 PANTHER EUKARYOTIC RELEASE FACTOR 1 (ERF1) FAMILY PROTEIN 1 381 - -
Lja1g0777 384 SUPERFAMILY Translational machinery components 139 274 - -
Lja1g0777 384 SUPERFAMILY L30e-like 278 379 IPR029064 -
Lja1g0777 384 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 128 IPR038069 -
Lja1g0777 384 Gene3D - 273 383 IPR029064 -
Lja1g0777 384 Pfam eRF1 domain 3 278 374 IPR005142 -
Lja1g0777 384 TIGRFAM pelota: mRNA surveillance protein pelota 5 374 IPR004405 GO:0070481|GO:0070966|GO:0071025
Lja1g0777 384 Pfam eRF1 domain 1 1 128 IPR005140 -
Lja1g0777 384 Gene3D Pelota, domain A 1 131 IPR038069 -
Lja1g0777 384 SMART eRF1_1_2 1 130 IPR005140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0777 Lja-Chr1 7541258 7542412 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0777 K06965 - gmx:100803618 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0777 1 7541258 7542412 Lja1g0777 1 7541258 7542412 ECH