Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0774 ATGTCTGCTTGTAATCCACACCTTCCTAGGTACTCCCCAGCCCTGGGTGTGCCTCCCGCCAAGTCCTTAGCCAGTATTGCCGCTTCCAAGCCTATGGGGAACCGCCATGAACCACAGAGGGAAGGGAAGCAACCCACAAGCTCCTCTGGCCAACCCCATGATTCAGTAGAGCTAGAATACTGGAGAATGAAAGTAGGAACAAAACCAATGAAGTTTGTGACTGAGTTCCCACCGAATATGCCTAGGCCAAGCAATCTACCTCTAAATACTCCCATCCCTGAAGTTCATGCAACCCCTGTAGTGATCTCCCCACAGATCCCTCCTGACTCCGAGTCGCCGGCCACTGCTGAGAGGATGGTAACGACAGTAGTAGCACCAGTGGATAAGGAAGCTTCCTTTTTAAACATAGATGCTGACTTTGTCCTGGGAACAGGATCAGCGCGATCCAATAACTGGTACGAATGTATGATAACAAGAACGTCGCTGAAATCGTCACTGATATCCCCAGGGCTAGGCCCTAGGAAACTCAGTGACCTTGGAATAGTCAAGGAAGATATTGGACTACAAGAAGAGGTGGTGACTGTGGATTACCCAAGTCCAACTCACCAAGGGGTTAGCACTTTTGGTGCGAACTTAGCTGCCAGTGATGTCCACAGAGCAAAGAACACTCTAGCAAAATGGGAAGCAAGGTCCAAGGCGCGAAGAGGGAAAACTAAAGAGAGAAATAGCCAGAGTAAAACTGTTGATGGGGAATACTATGTCGAGTTCCCGAGTGAGGAGGATAGTGGGACCAGTTTGCACGAACCTGAGGAAAACAACTTGGCAGTGGGCTTCTCCAGGCGAGCCTTATCGTGCCCCACCCCCCCAGATGAGTATCATCAGCTGGAACTGTCGTGGCTTGGCGGTTGCCACGACGAGTTCAGAGCTCAAAGATCTTTGCAAGAAGATCAAACCGGCCTTGGTGCTTCTGGGGGACTGGCTCTCCTCTGGGATGACTCAGTTGAAGTGGAAATCCTGGACTCTTGCACTAACTATATCCATGCGGCAATTACGATTAAACAAGAGCTCGACACTTGGGAGTGCACCTTCCTCTATGCACCCCCTATTTTTAGCCAGCGAAGAGTTATGTGGGAAAAAATAGCAACTCTCAAGCCACTGTTTGATAGAGCTTGGTGCTGCCTTGGAGATTTCAACGAGGTTCTCTCGCAGGCTGAAAAGGATGGCCTCAGACCAATTGCAACTAACAGGATGATGACAGAGATGACTAGTGTGGGTACCCCTGCACAAACCAACCAGACAAGGGACACAGATGCTCGATCGGTGCAGAGAAGACAACCCAGCAAAGCTTGGGCTAAGCCTCCTTCCCAGTTTATCAAATGCAACGTGGACGCTGCCCTACAAAGCACAAACTCTCTTGGATCCACGGGTATTATCGTCAGAGACAGTAGGGGGAACATGATCACGGGGATAGCTTCAAAAATCTTTGCTACCTCCCCCATCATTGCAGAGGCCATTGCCTTCCGTGAAGGTATCTCTTTCCTGACAAATACAGGGTATCCCAAAGCTGTGATGGAGTCAGATTGCCAACCGCTTGTTAGAGCCTGTAAAGGTGAATCCCGGATTGGAGAAATTAAAGGCATCGTGGAAGACATCTTAGAGTTGAGAAAGCAATTCCAGTATTGTGCTTTCTCTTGGACCCCGAGAGAAGATTGTCACCGCCGAGATACGATGGGTGGCAGTAGTAGAAAAGGTAAAAAACGAAGAGCAGATGACTCTGACACCGACTCCTCTGACTCTGACAACCACCGTAGAAGTAGTCGGTCACGGCGGGACGCAGATGATGCCAGTAGGAAGAAGAAGTCATCGAGGGATGTCACGGAAGAAGAAATAACACAGTACTTGTCCAAAAAGGCCCAGAAAAAGGCAATGAAAGTCGCTAAAAAAATCAAGACCACTACGGTGTCGGGTTACTCCAATGACTCAAATCCATTTGGTGACTCTAATCTCAATGAGAAGTTTGTTTGGCGCAAGAAGATTGAGCGTGATGTTTCTCAAGGTGTGCCTCTTGATGCGTTTTCTATGAAAGCAGAGAAAGAGAGACAAAGAGATAGGATGGCGGAAATTGAAAAAGTGAAAAAGAGAAGAGAAGAAAGGGCACTTGAGAAAGCACAACATGAGGAAGAAATGGCATTGCTAGCCAGAGAACGTGCTCGAGCTGAGTTCCAAGACTGGGAGAAAAAGGAAGAGGAGTTTCATTTTGATCAAAGCAAAGTTAGGTCAGAGATTAGATTGCGTGAAGGGCGTGCGAGGCCAATCGATGTCCTAACCAAGCACCTCAATGGCTCTGATGATTTGGATATAGAAATCAATGAACCATATATGGTCTTCAAGGGTTTGACTGTGAAAGAAATGAATGAGCTTCGTGATGACATCAAAATGCATCTGGATCTTGACAGGGCAACACCGACCCATGTAAAATATTGGGAGGCTCTCCTTGTGGTGTGTGATTGGGAGCTAGGTGAAGCTCGAAAAAAAGATGCACTTGATCGAGCTAAGGTGCGTGGTGAAGAACCTCCTGCTGAGCTGCTTGCTGAAGAAAGGGGTCTGCATTCCAGTGTTGAGCCAGATGTGAAGAGGCTTTTGCAGGGGAAGACACTTGCAGAGTTGGAGGCCTTACAGCTTCATATTGAGTCAGAGATGCGTACTGGTACAGCAAAGGTGGTTGAGTACTGGGAAGCCATTTTAAAATATCTCGACATATACAAGGCCAAGGCTTGTTTAAAAGAAATTCATGCTAAAATGTTGCGTAAGCATTTGGAACGCCTTGAGCAGCCATCAGAGGATGAAGATAAGTTGGAGAATGCTCTTGTTCCAATACCTGAGGAGGGAGATGCTGAGGATGATGTTGAAGTCCGATCTGCAGATGAATCGTTTTCACCAGAGCCCATTAGAGAGAATCAAGAAGCTGAAGATGAGGCTGGATCATTTTCACCCGAACTGTTGCATGGTGATGATAATGAAGAAGCTATTGACCCTGAAGAGGACAGGGCTATACTGGAGCGGAAACGTTTGGTTGTACTAGAAGAGCAGCAAAGACGAATTCGGGAAACAATGGCATCAAAACCAGCTCCATCTGAAGATCATTTTGAGATGAAGGCTATAAAAGCTATGGGAGCTATGGAAGATGGAGATGCAGTGTTTGGATCTGGTGCTGAAGTTAACCTCGATTCACAGGTCTATTGGTGGCATGACAAATACAGGCCTAGGAAGCCGAAGTACTTCAACCGTGTTCACACTGGATATGAGTGGAACAAATATAATCAGACTCACTATGACCATGACAACCCACCCCCAAAGATTGTGCAAGGTTACAAATTCAACATTTTTTATCCTGATCTTGTTGATAAGATAAAAGCCCCAACCTACTCCATTGACAAGGATGGCAGCAATGGAGAGACTTGCATCATAAGATTCCATGCAGGGCCACCATATGAGGACATAGCTTTCCGCATTGTTAACAAGGAATGGGAGTATTCTCATAAGAAAGGTTTTAAGTGCACATTTGAACGTGGCATTCTGCACGTCTACTTCAATTTCAAACGCCACCGCTACCGCCGATAG 3621 0.4695 MSACNPHLPRYSPALGVPPAKSLASIAASKPMGNRHEPQREGKQPTSSSGQPHDSVELEYWRMKVGTKPMKFVTEFPPNMPRPSNLPLNTPIPEVHATPVVISPQIPPDSESPATAERMVTTVVAPVDKEASFLNIDADFVLGTGSARSNNWYECMITRTSLKSSLISPGLGPRKLSDLGIVKEDIGLQEEVVTVDYPSPTHQGVSTFGANLAASDVHRAKNTLAKWEARSKARRGKTKERNSQSKTVDGEYYVEFPSEEDSGTSLHEPEENNLAVGFSRRALSCPTPPDEYHQLELSWLGGCHDEFRAQRSLQEDQTGLGASGGLALLWDDSVEVEILDSCTNYIHAAITIKQELDTWECTFLYAPPIFSQRRVMWEKIATLKPLFDRAWCCLGDFNEVLSQAEKDGLRPIATNRMMTEMTSVGTPAQTNQTRDTDARSVQRRQPSKAWAKPPSQFIKCNVDAALQSTNSLGSTGIIVRDSRGNMITGIASKIFATSPIIAEAIAFREGISFLTNTGYPKAVMESDCQPLVRACKGESRIGEIKGIVEDILELRKQFQYCAFSWTPREDCHRRDTMGGSSRKGKKRRADDSDTDSSDSDNHRRSSRSRRDADDASRKKKSSRDVTEEEITQYLSKKAQKKAMKVAKKIKTTTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVSQGVPLDAFSMKAEKERQRDRMAEIEKVKKRREERALEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVKEMNELRDDIKMHLDLDRATPTHVKYWEALLVVCDWELGEARKKDALDRAKVRGEEPPAELLAEERGLHSSVEPDVKRLLQGKTLAELEALQLHIESEMRTGTAKVVEYWEAILKYLDIYKAKACLKEIHAKMLRKHLERLEQPSEDEDKLENALVPIPEEGDAEDDVEVRSADESFSPEPIRENQEAEDEAGSFSPELLHGDDNEEAIDPEEDRAILERKRLVVLEEQQRRIRETMASKPAPSEDHFEMKAIKAMGAMEDGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPTYSIDKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR* 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0774 1206 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 578 1206 - -
Lja1g0774 1206 PANTHER BNAC05G02180D PROTEIN 578 1206 - -
Lja1g0774 1206 Pfam Conserved mid region of cactin 734 931 IPR018816 -
Lja1g0774 1206 MobiDBLite consensus disorder prediction 943 1009 - -
Lja1g0774 1206 MobiDBLite consensus disorder prediction 943 957 - -
Lja1g0774 1206 Pfam Cactus-binding C-terminus of cactin protein 1082 1206 IPR019134 GO:0005515
Lja1g0774 1206 Pfam Reverse transcriptase-like 461 570 IPR002156 GO:0003676|GO:0004523
Lja1g0774 1206 MobiDBLite consensus disorder prediction 1 56 - -
Lja1g0774 1206 MobiDBLite consensus disorder prediction 425 449 - -
Lja1g0774 1206 SMART CactinC_cactus_3 1082 1206 - -
Lja1g0774 1206 Coils Coil 698 742 - -
Lja1g0774 1206 MobiDBLite consensus disorder prediction 229 246 - -
Lja1g0774 1206 MobiDBLite consensus disorder prediction 229 251 - -
Lja1g0774 1206 MobiDBLite consensus disorder prediction 572 629 - -
Lja1g0774 1206 Gene3D - 457 578 IPR036397 GO:0003676
Lja1g0774 1206 SUPERFAMILY DNase I-like 321 414 IPR036691 -
Lja1g0774 1206 MobiDBLite consensus disorder prediction 972 1005 - -
Lja1g0774 1206 Gene3D Endonuclease/exonuclease/phosphatase 290 454 IPR036691 -
Lja1g0774 1206 CDD RNase_H_like 460 569 IPR044730 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0774 Lja-Chr1 7506450 7518542 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0774 K25058 - gmx:100805202 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0774 1 7506450 7518542 Lja1g0774 1 7506450 7518542 ECH