Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0771 ATGGACGCTCCTCGTAAACACCAGGTGTCACTGAGAGGAGCGAGTGCGAAGGAGATAACGAGGGATGATCTTCTCCAGAAAGTCTCCCGCGAAAGAGAGCTTCGCAATTATGCAAAACGCGCTGCTGCTGCTGCTCTCTTCATTCAGAGGGTATGGAGGCGCTTCAAGGTTATGAAGATGGTTTCCTTGCAGCTTCAGCAGGAGTGGGAGACAATGGTGAATAATTATAGTGGGGTGAAGACAGCCGTTTGGATTTCAGACAATTTGTTGAGACCATTTTTGTTCTTTATGATAAGCTCCTCAACTAAGCATCAGAAGATCCATAGGAAGAAGATAGACTCTGTGAAGATTTGCTTTACAATCCTTTTGGAAAGCCTGAAATCTTCTGATTCAAAGCAGAACTATTGCTTTCTGGCAATTGGTACAACTGAAGAGAGAAGAATATGGAGTTACCAGGTGCAGCAGCTGACTTCTCTTGGTTTTCTGATTCTTTCGGAGTTTAGTGAATGCAACTCAGGGGCTGAAGATATTACTATTGTTACATCCCTGGCAATGCGTGTCCTTGTTATGTTAACTGATTTGAAAGGATGGAAAGGCATTACAGATGACAATCGCTTAGATGCAGATTTAGCAGTGAAAGATTTAATTCAGTTCTTGGGGAGTAGTAAAAGTGGTAGTTATGTTTCTATTGCCAGATATATTAGTGCATTGGATAATTATTCTTCTAAGTCTAGAATTATCACCCAGGCAGACGAAAACTTTTTCATTACAACAAGTGCAATAACTTTAGCTGTGCGGCCATTTCATCTGACAAACTTCAATGTCGAAGGGCCTGGAATGCTGGATGTCAACCATGCTGTTAAGCAGTATATTGTATATCTACTGACTATTCCTTGGCTTGTGCAACATCTTCCACCTGTTCTCCTCCCTGCTTTGAAGCACAAATCTATTTTGTTCCCATGCTTCCAGAATTTATTGATTTTGAAAGAGAATGTTTTAATGGAGATGTCAGAGTTGGACAAGTCAGAGAATGTTGTCTCTTTCAAGGCAATTCCACCAGTTGGTTGGGCTCTTGCTAACATCATATGCCTTTCAAGGGGGAATGAGAATGATTCTATTGACTCTGGATCCTTCAATCAAGGTTTAAACTATGCATTATATGTCCATGTTGTTATCATTCTAGCAGAAAGCTTACTGGCTTGTCTTGATAATATTGGATGGGTTAGGAAGAGGAAGGCCCTTCAAACTGATGTTGAAAGCTCAAGGCAGCCAGTTGATTTGGTTCGACATGAGGGTGAGGCAACAAATGAGTCATTAATAATGTCATTCATGGATCAGTTTAGGCCTGTTTGTCAGCAGTGGCATCTCACAAATCTTTTGGCATCAATAAATAGAGATGCCTCCAACAAGGCTGAGACTTTGCTCTCAAATAGTGTGGAATCTTTGGGGAAGCTAGATTTGTGTGATATTGCACTTTTTTACTCCAACTTAATTAGAATTTTTTCGGTCTTGAGTCCAATTCGTGGCTCATTACCAGTCCTCAATATGCTATCGTTCACTCCTGGATTTCTTGTGAAATTGTGGGGTGTACTGGAGGTTTCCTTTATCTCTGGAGACAAACATATTTCTGATAATCACAAAAGTGGAAATGTAAAACAAAAAGCTTTAGAGAAGATGCAAAAACAGGTAAGTAAAGATGGGACTAATAAGTGGGTCAGCGTACTTCATAAGTTTACGGGCAAGTCACAAACTGCAACAGGTGATACAGATCCCACTGGGAATCACTCTGAGCCCAGCAGAGTGAATGAGGATTCATCAGATATATGGGACGTAGAACCTATGAGGCATGGCCCACAGGGCATTCCAAAGGATATGTTTTCTTTGCTTCATCTTTTCTGCGCGACCTATTCTCATCTGCTTTTAGTTCTTGATGACATAGAATTCTATGAGAAACAGGTTCCATTCAAATTAGAGCAGCAACGAAGAATTGCATCAATGCTGAATACCCTAGTGTATAATGGCCTGTCCCATGTTAGTAGTCATCATAATGGGTTCCTCATGGATTGTGCTGTCAGATGCTTACATTTAATGTATGAAAGGGATTGCAGACACCCTTTTTGTCCTCCTGATTTGTGGCTTTCTCCTGCTAGAAAAAGCCGGCCTCCAATTGCTGTTGCTGCCAGAACTCATGAAATATTATCAGCCAACCTGAGATTTGATGATTCATCAGCCTCCCTGAGTGTAGGTTCCGTTATCACCATGACTCCTCATGTGTTCCCTTTTGAAGAGAGAGTTGAGATGTTCCGTGAATTCATCAAGATGGATAAAGCCTCCCGAAAAATGGCTGGTGAAATTTCTGAACCTGGTTCACGAGCCGTTGAGATAGTAGTACGTCGAGGTCATATTGTTGAAGATGGATTTCGGCAATTAAATTCCCTTGGACCAAGGTTGAAGTCATCCATCCATGTATCATTTGTCAGTGAATCTGGCCTTCTGGAAGCTGGTCTAGACTATGGAGGATTATCTAAAGAGTTTTTAACTGACATATCAAAAGCTGCATTTTCCCCTGAATATGGACTTTTTACACAAACCTCAACTTCAGACAGGCTGCTAATTCCAACTGCATCTGCAAGATATTTGGACAATGGTTTTCAGATGATTGAGTTCCTTGGAAGAGTAGTCGGTAAAGCTCTTTATGAAGGAATATTGCTTGATTACTCCTTCTCGCATGTTTTTGTAGAAAAGTTATTAGGACGATATAGCTTTCTGGATGAATTGTCAACACTTGATCCAGAGCTATACAGGAATCTTATGTATGTCAAGAATTATGATGGTGATGTCAAGGACCTCTGTCTTGATTTCACAGTTACTGAAGAATCATTTGGAAAAAGGCATGTGGTTGAGCTCAAGTCTGGCGGCAAAGATATTTCTGTGACAAATGAGAACAAGATGCAGTACATCCATGCAATGGCAGACTACAAACTTAATCAACAGATACTGCCCTTTTCAAATGCATTTTATAGAGGATTAACTGATCTTGTATCTCCATCCTGGTTGAAGTTATTCAATGCGAATGAATTTAATCAGTTGCTTTCAGGTGGCAATTACGATATTGATGTTGATGATTTGAAAAATAACACGCGATACACTGGCGGTTACAATGAGGGAAGTCGGACAATCAAGATCTTTTGGGAGGTATTGTTACCACATGTGATTAAAGGTTTTGAACCCGAAGAGCGTTGTATGCTTCTTAAATTTGTCACCAGCTGTTCTCGTGCTCCATTACTTGGATTCAAATATTTGCAGCCACCTTTTACCATCCATAAGGTTGCATGTGATGTCCCACTTTGGGCAACGATTGGCGGACAAGATGTAGAGAGGCTTCCATCAGCTTCAACTTGCTACAATACTCTTAAGCTTCCAACATACAAACGTTCAGGCACTTTGAGAACAAAGCTTCTATATGCTATCAGTTCAAATGCAGGGTTTGAACTTTCTTGA 3501 0.4067 MDAPRKHQVSLRGASAKEITRDDLLQKVSRERELRNYAKRAAAAALFIQRVWRRFKVMKMVSLQLQQEWETMVNNYSGVKTAVWISDNLLRPFLFFMISSSTKHQKIHRKKIDSVKICFTILLESLKSSDSKQNYCFLAIGTTEERRIWSYQVQQLTSLGFLILSEFSECNSGAEDITIVTSLAMRVLVMLTDLKGWKGITDDNRLDADLAVKDLIQFLGSSKSGSYVSIARYISALDNYSSKSRIITQADENFFITTSAITLAVRPFHLTNFNVEGPGMLDVNHAVKQYIVYLLTIPWLVQHLPPVLLPALKHKSILFPCFQNLLILKENVLMEMSELDKSENVVSFKAIPPVGWALANIICLSRGNENDSIDSGSFNQGLNYALYVHVVIILAESLLACLDNIGWVRKRKALQTDVESSRQPVDLVRHEGEATNESLIMSFMDQFRPVCQQWHLTNLLASINRDASNKAETLLSNSVESLGKLDLCDIALFYSNLIRIFSVLSPIRGSLPVLNMLSFTPGFLVKLWGVLEVSFISGDKHISDNHKSGNVKQKALEKMQKQVSKDGTNKWVSVLHKFTGKSQTATGDTDPTGNHSEPSRVNEDSSDIWDVEPMRHGPQGIPKDMFSLLHLFCATYSHLLLVLDDIEFYEKQVPFKLEQQRRIASMLNTLVYNGLSHVSSHHNGFLMDCAVRCLHLMYERDCRHPFCPPDLWLSPARKSRPPIAVAARTHEILSANLRFDDSSASLSVGSVITMTPHVFPFEERVEMFREFIKMDKASRKMAGEISEPGSRAVEIVVRRGHIVEDGFRQLNSLGPRLKSSIHVSFVSESGLLEAGLDYGGLSKEFLTDISKAAFSPEYGLFTQTSTSDRLLIPTASARYLDNGFQMIEFLGRVVGKALYEGILLDYSFSHVFVEKLLGRYSFLDELSTLDPELYRNLMYVKNYDGDVKDLCLDFTVTEESFGKRHVVELKSGGKDISVTNENKMQYIHAMADYKLNQQILPFSNAFYRGLTDLVSPSWLKLFNANEFNQLLSGGNYDIDVDDLKNNTRYTGGYNEGSRTIKIFWEVLLPHVIKGFEPEERCMLLKFVTSCSRAPLLGFKYLQPPFTIHKVACDVPLWATIGGQDVERLPSASTCYNTLKLPTYKRSGTLRTKLLYAISSNAGFELS* 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0771 1166 Gene3D Hect, E3 ligase catalytic domain 919 998 - -
Lja1g0771 1166 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1166 IPR044611 GO:0000209|GO:0061630
Lja1g0771 1166 ProSiteProfiles HECT domain profile. 817 1166 IPR000569 GO:0004842
Lja1g0771 1166 Gene3D Hect, E3 ligase catalytic domain 1036 1165 - -
Lja1g0771 1166 CDD HECTc 794 1164 IPR000569 GO:0004842
Lja1g0771 1166 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1166 - -
Lja1g0771 1166 SUPERFAMILY Hect, E3 ligase catalytic domain 793 1159 IPR035983 GO:0004842
Lja1g0771 1166 MobiDBLite consensus disorder prediction 581 599 - -
Lja1g0771 1166 Gene3D Hect, E3 ligase catalytic domains 795 1033 - -
Lja1g0771 1166 SMART hect_3 811 1166 IPR000569 GO:0004842
Lja1g0771 1166 MobiDBLite consensus disorder prediction 581 606 - -
Lja1g0771 1166 Pfam HECT-domain (ubiquitin-transferase) 848 1166 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0771 Lja-Chr1 7484324 7496711 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0771 K10588 - gmx:100527169 1984.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0771 1 7484324 7496711 Lja1g0771 1 7484324 7496711 ECH