Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0768 ATGGAACGATGGAGTCACTTCTCCTTCTCCATCCCAAACCTTTCTTCCTCTCCAACTCCAACTCACCTCCAATCTCCTCTTTCCTCCACAAAAACTCCAGAATCCACCATGCCCTCAACTCTCTTCCACTCCCACTCCCACCCCATCCACGCCACACTCCTCAAACTCCCCCATCAACAACACCAACACCTCCTCTTCTCCACCTACCTCAACCTCGGCCTCTTATCCTACGCCCACCGCATCTTCCTCTCCCTCTCTTCCCCCACTGTCATCTCCTACTCCGCCCTCATCTCCGCCTTCTCCAAGTCCCACCGAGAACACCAAGCCTTCCACCTCTTCCTCCACATGCTCACCTCCTCCACTGTCCTCCCCAATGGCTACACCTACGTCGCCGTTTTAACCGCCTGCATTCGAACCCTCCACCTCCAGTTCGGCCTCCAGCTCCACGCCGCCGTCATCAAGACCGCTTATATCGATTCTGTCTTCGTCGCCAATGCGCTCATGTGTTTATACTCAAAATGCGGCTCTCATGATGACATGCTCAAGCTGTTTGATGAAATGCCCAGCAGGGATATCGCGTCGTGGAACACTGTTTTGTCCGGTGCGGTGCAGGAGCTCATGTACGGGACCGCGTTTGAGTTGTTCCGTGATATGCAGGCGACGGACGCGTTGAGTTTGGATGATTTCACGTTGTCGACGCTTCTTACCGCGTGTTCTGGTTCTGCTTCGGTGATGGAAGGCCTGCAGGTGCACGCGCATGCCGTGAAGGTTGGGCTGGAGACAGAGCTGAGTGTTGGAAATTCCCTTATTGGGTTCTACACGAACTGTGGAAGTCTTGACAATGTGGTGAGGTTGTTTGAGGAGATGAGTGTGAGGGATGTTATAACGTGGACAGAGATGATCACCGCGTACATGGAGTTTGGGTTGGTGAATTTGGCTTTGAAGATATTTGATGAGATGCCGGAAAAGAATTCGGTGTCTTATAATGCTCTTCTGGCCGGGTTTTGCCAAAATGGTGAGGGTTTAAAGGCTCTAGATTTGTTCATCAGAATGGTGGATGAGGGCTTGGAGTTGACGGATTTCTCATTGACTAGCGCGATTAATGCCTGCAGTTTGCTTGCTGATTACAAGGTCAGCAAGCAGATTCATGGGTTTGCTACCAAGTTTGGTTTTGGATCAAATGCTTGTGTTGAAGCTGCGTTGCTTGACATGTACACGAGGTGTGGGAGGATGGTAGATGCCAAGAAGATGTTCTGTAGATGGGAGTTAGAGGAATTTAGCTCTATCGTTTGGACATCCATGGTGTGTGGCTATGCTCGAAACGGGCAACCGGACGAGGCAATCTCTCTTTTCAAACATGGCCAATCAGAAGGGGAAATGATTGATGAAGTTGCATCGACTTCAATGCTTGGTCTTTGTGGAACTGTCGGGTATCATGATATGGGTAAGCAAATCCACTGCCAAGTTCTTAAGTTTGGCTTTCAATCTAATGTGGGGGTCGGAAATGCAGTTGTTAGCATGTACTTTAAGTGTGGGAATGTGGATGATGCAATTAAGATGTTTAATAGTATGCCCTCTGCTGATATAGTTTCATGGAATACTTTGATTTCTGGCTATCTCATGCATAGACAGGGTGATAGAGCATTGAAAATATGGTCGAAAATGCAGGAGGTGGGCATAAAACCTGATAAGATTACATTTGTTTTGATAATTCCAGCTTACAGGCAAACTAAATTGAATTTGGTTGATGATTGCCGTAGTTTGTTTAATTCAATGAGAACTATTTATCACATTGAGCCCACAACCGAGCATTATTCTTCTTTCATCAGTGTTTTGGGTCACTGGGGTCTCTTGGAAGAAGCATTGGAAACTATCAATAAGATGCCTTTTGAGCCTACTGCTTCTGTTTGGCGTGCTTTGCTTGTTAGTTGTAGACTACATAAGAATACAATGATTGGGAAATGGGCTGCTAAAAATATTCTTGCCCTGGAACCTGAAGATCCATCTACCTATATTCTTGTTTCAAATTTGTATTCTGCTTCTGGGAGATGGGATTTCTCTGAAACTGTCAGGTGGAATATGAGAGAAAAGGGATTTCGCAAACACCCAGCTCAAAGTTGGATCATTTGTCAGAAGAAAATACATTCATTCTATGCAAGAGATAGATCACATTCACAAGAGAAAGACATATATAGTGGATTGGAGATTCTAATCTTGGAGTGCCTAAAAGCAGGATATGAACCTGACACGAGTTTTGTTCTCCATGAAGTAGAGGAGCATCAAAAGAAAAATTTCCTATTCTATCACAGTTCAAAACTGGCAGCAACTTATGGAATACTGATGACGAAGCCCGGAAAACCCATTCAAATTGTAAAGAACATCCTGCTCTGTGGGGACTGTCATACATTCTTAAAATATGCATCTATTGTCACTAAGAGGGATATTTTTCTAAGAGACTCTTCTGGATTTCATTGTTTCTCTAATGGCCAGTGCTCGTGTAATGACTACTGGTGA 2514 0.4539 MERWSHFSFSIPNLSSSPTPTHLQSPLSSTKTPESTMPSTLFHSHSHPIHATLLKLPHQQHQHLLFSTYLNLGLLSYAHRIFLSLSSPTVISYSALISAFSKSHREHQAFHLFLHMLTSSTVLPNGYTYVAVLTACIRTLHLQFGLQLHAAVIKTAYIDSVFVANALMCLYSKCGSHDDMLKLFDEMPSRDIASWNTVLSGAVQELMYGTAFELFRDMQATDALSLDDFTLSTLLTACSGSASVMEGLQVHAHAVKVGLETELSVGNSLIGFYTNCGSLDNVVRLFEEMSVRDVITWTEMITAYMEFGLVNLALKIFDEMPEKNSVSYNALLAGFCQNGEGLKALDLFIRMVDEGLELTDFSLTSAINACSLLADYKVSKQIHGFATKFGFGSNACVEAALLDMYTRCGRMVDAKKMFCRWELEEFSSIVWTSMVCGYARNGQPDEAISLFKHGQSEGEMIDEVASTSMLGLCGTVGYHDMGKQIHCQVLKFGFQSNVGVGNAVVSMYFKCGNVDDAIKMFNSMPSADIVSWNTLISGYLMHRQGDRALKIWSKMQEVGIKPDKITFVLIIPAYRQTKLNLVDDCRSLFNSMRTIYHIEPTTEHYSSFISVLGHWGLLEEALETINKMPFEPTASVWRALLVSCRLHKNTMIGKWAAKNILALEPEDPSTYILVSNLYSASGRWDFSETVRWNMREKGFRKHPAQSWIICQKKIHSFYARDRSHSQEKDIYSGLEILILECLKAGYEPDTSFVLHEVEEHQKKNFLFYHSSKLAATYGILMTKPGKPIQIVKNILLCGDCHTFLKYASIVTKRDIFLRDSSGFHCFSNGQCSCNDYW* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0768 837 Pfam PPR repeat 91 118 IPR002885 -
Lja1g0768 837 Pfam PPR repeat 502 527 IPR002885 -
Lja1g0768 837 Pfam PPR repeat 267 292 IPR002885 -
Lja1g0768 837 Pfam PPR repeat 400 421 IPR002885 -
Lja1g0768 837 Pfam PPR repeat 604 628 IPR002885 -
Lja1g0768 837 Pfam PPR repeat 430 456 IPR002885 -
Lja1g0768 837 Pfam E motif 647 708 IPR046848 -
Lja1g0768 837 Gene3D Tetratricopeptide repeat domain 579 728 IPR011990 GO:0005515
Lja1g0768 837 Gene3D Tetratricopeptide repeat domain 56 142 IPR011990 GO:0005515
Lja1g0768 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Lja1g0768 837 PANTHER OS07G0172600 PROTEIN 457 823 - -
Lja1g0768 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 323 IPR002885 -
Lja1g0768 837 Pfam PPR repeat family 191 238 IPR002885 -
Lja1g0768 837 Pfam PPR repeat family 528 573 IPR002885 -
Lja1g0768 837 Pfam PPR repeat family 323 370 IPR002885 -
Lja1g0768 837 PANTHER OS07G0172600 PROTEIN 48 369 - -
Lja1g0768 837 Pfam DYW family of nucleic acid deaminases 745 837 IPR032867 GO:0008270
Lja1g0768 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Lja1g0768 837 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 457 823 - -
Lja1g0768 837 PANTHER OS07G0172600 PROTEIN 358 451 - -
Lja1g0768 837 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 358 451 - -
Lja1g0768 837 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 48 369 - -
Lja1g0768 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Lja1g0768 837 Gene3D Tetratricopeptide repeat domain 254 380 IPR011990 GO:0005515
Lja1g0768 837 Gene3D Tetratricopeptide repeat domain 381 476 IPR011990 GO:0005515
Lja1g0768 837 Gene3D Tetratricopeptide repeat domain 477 578 IPR011990 GO:0005515
Lja1g0768 837 Gene3D Tetratricopeptide repeat domain 146 253 IPR011990 GO:0005515
Lja1g0768 837 MobiDBLite consensus disorder prediction 15 39 - -
Lja1g0768 837 TIGRFAM PPR: pentatricopeptide repeat domain 295 324 IPR002885 -
Lja1g0768 837 TIGRFAM PPR: pentatricopeptide repeat domain 429 452 IPR002885 -
Lja1g0768 837 TIGRFAM PPR: pentatricopeptide repeat domain 326 359 IPR002885 -
Lja1g0768 837 TIGRFAM PPR: pentatricopeptide repeat domain 165 192 IPR002885 -
Lja1g0768 837 TIGRFAM PPR: pentatricopeptide repeat domain 502 530 IPR002885 -
Lja1g0768 837 TIGRFAM PPR: pentatricopeptide repeat domain 530 563 IPR002885 -
Lja1g0768 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0768 Lja-Chr1 7454161 7464376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0768 49 837 Glycoside Hydrolase AT3G49170 33.499 2.32e-147 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0768 - - mtr:MTR_7g103230 1236.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0768 1 7454161 7464376 Lja1g0768 1 7454161 7464376 ECH