Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0749 ATGGAACTACGAACACGCTCTGCACTTCATCTTCTTCCCAAGCCACCCTTCAACTCCTCCATCTCCTTCTTCTCCTCCCAACCACTCTCACTCCCCGAACCCAATCCCCAAGACCAGAAACGCCATCAGAAAGTTCAAAAGCTTCAATCATTACTCCACCAGGATCGCATCAAAACCGCACGAAGGTTCCTCAAATCGCTTCTCCTCTCCAAAACAACCTTCTCTTCCCTCTCTGAACTCCACGCATTCGTCTCAAAACCCATATTTTCTGATACCCTTTTATGGCTTTGTTCCAGTCCCAAAACGCTCAACGATGCCACCGAGCTTTACTCTTCCATGAGAAAAGACGGCGTTCTCCCCTCTGTGCGTTCTGTCAACCGTTTGTTCGAGACTCTGGTCGGTTCAAAGCAGTTTGAGAAAGTTCTTGCTGTGTTTACTGACATGGTGGAATCTGGGATTCGGCCTGATGTTGTGTCTTATGGGAAAGCTGTTGAGGCTGCGGTGATGTTGAAGGATCTTGATAAGGGTTTTGAGTTGATGGGTTGCATGGAGAAGGAAAGGGTTGGTCCTTCTGTTTTTGTGTATAATTTGGTGTTGGGTGGGTTGTGTAAAGTGAGGAGGGTCAAGGATGCTCGGAAGCTGTTTGATGAAATGTTGCACAGAAACCTGGTTCCGAATACGGTCACTTATAATACGCTTATCGATGGGTACTGTAAGGTGGGTGAGATGGAAAAAGCTTTTAGTTTGAAGGCGAGGATGAAGGCCCCAAATGCGGAGCCGAGTGTAATCACGTATAATTGCTTGTTAGGGGGACTTTGTAGTTCGGGGAGGGTGAACGATGCGAGGGAGGTGTTGGTGGAGATGGAGGGGAATGGTTTTTTGCCTGGTGGGTTTTCGCGTATTGTGTTTGATGATGATTCAGCGTGTTCAAATGGTAATGGCTCGTTGCGTGCAAATGTAGCAGCAAGGATTGATGAGCGTACTTATAGTGCTTTGTTGAATGGATTTTGCAGGGTGGGTAGGATTGAAAAGGCCAAGGAGGTTTTGGCCAAGCTTGTGGAGAATGGAGTTGTTCCGAGCCAGATATCATATAATATACTAGTGAATGCATATTGCCATGAGGGTTACGTTGAGAAAGCTATACAGACAGCTGAACAAATGGAGGAAAGAGGGTTGAAACCTAGTTATGTCACCTTCAATACTCTGATTAACAAGTTCTGCGAAACTGGGGAGGTGGACCAGGCTGAGAGATGGGTTAAGAAGATGCTGGAGAAGGGTATTGCCCCGACTCTGGAGACGTATAATTCTTTAATAAATGGATATGGCCGAATTAGCAATTTTGTCAAGTGTTTTGAGATTCTTGAAGAAATCGAAAAGAAAGGGATGAAGCCTAATGTTATAAGCTACGGTTCTCTGATCAATTGTCTATGCAAGGATCGTAAGCTTCTTGATGCTGAGATTGTGCTAGGGGATATGGCAAGTCGTGGAGTTTCTCCAAATGCAGAAATATATAATATGCTCATTGAAGCTAGTTGCTCATTGAGTAAATTAAAAGATGCCTTCAGATTTTTGGATGAAATGATAAAAAATGGAATAGATGCAACTCTTGTGACATATAATACCCTGATACATGGGCTGGGAAGAAATGGAAGGTTGGCGGAAGCCGAGGATATGTTTCTCCTAATGACTAGCAAAGGATATAAGCCGGATGTGATAACATACAATTCCCTGATCTCCGGATATGCCAATTTAGGAAACACCAAGAGATGCCTTGAATTGTATGACAATATGAAGACGCAAGGCATAAAGCCCTCAATTGGGACTTTCCACCCTTTGATCAATGAATGCAAGAAGGAAGGTGTGGTGACAATGGAGAAAATGTTTCAAGAAATATTGCAGATGGATTTGGATCCAGATCGAGTTGTTTATAATGAGATGATTTACGGTTATGCTGAAGATGGAAATGTTCTGAAGGCAATGTCTTTGTATCAACAGATGATTGATCAGGGAGTGGATTCTGACAAGGTGACTTACAATTACTTGATTCTAGCACACCTTAGAGATAGAAAGGTTTCCGAAACAAAGCATCTTATTGATGATATGAAGGCCAAGGGACTGGTTCCAAAAACTGATACATATAACATTCTGGTTAAGGGACATTGTGACTTACAAGATTTCAGTGGTGCGTATTTCTGGTATAGGGAAATGTCAGACAGTGGTTTGTGTTTAAATAGTGGAATCAGCTATCAGCTGATATCAGGACTTAGAGAGGAGGGAATGCTGCAAGAGGCTCAAGTTGTGTCCTCAGAATTGAGTAGTAGAGAACTGAAAGAAGACTGA 2340 0.4321 MELRTRSALHLLPKPPFNSSISFFSSQPLSLPEPNPQDQKRHQKVQKLQSLLHQDRIKTARRFLKSLLLSKTTFSSLSELHAFVSKPIFSDTLLWLCSSPKTLNDATELYSSMRKDGVLPSVRSVNRLFETLVGSKQFEKVLAVFTDMVESGIRPDVVSYGKAVEAAVMLKDLDKGFELMGCMEKERVGPSVFVYNLVLGGLCKVRRVKDARKLFDEMLHRNLVPNTVTYNTLIDGYCKVGEMEKAFSLKARMKAPNAEPSVITYNCLLGGLCSSGRVNDAREVLVEMEGNGFLPGGFSRIVFDDDSACSNGNGSLRANVAARIDERTYSALLNGFCRVGRIEKAKEVLAKLVENGVVPSQISYNILVNAYCHEGYVEKAIQTAEQMEERGLKPSYVTFNTLINKFCETGEVDQAERWVKKMLEKGIAPTLETYNSLINGYGRISNFVKCFEILEEIEKKGMKPNVISYGSLINCLCKDRKLLDAEIVLGDMASRGVSPNAEIYNMLIEASCSLSKLKDAFRFLDEMIKNGIDATLVTYNTLIHGLGRNGRLAEAEDMFLLMTSKGYKPDVITYNSLISGYANLGNTKRCLELYDNMKTQGIKPSIGTFHPLINECKKEGVVTMEKMFQEILQMDLDPDRVVYNEMIYGYAEDGNVLKAMSLYQQMIDQGVDSDKVTYNYLILAHLRDRKVSETKHLIDDMKAKGLVPKTDTYNILVKGHCDLQDFSGAYFWYREMSDSGLCLNSGISYQLISGLREEGMLQEAQVVSSELSSRELKED* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Lja1g0749 779 PANTHER ATPASE EXPRESSION PROTEIN 3 38 772 - -
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Lja1g0749 779 Pfam PPR repeat 641 671 IPR002885 -
Lja1g0749 779 Gene3D Tetratricopeptide repeat domain 45 208 IPR011990 GO:0005515
Lja1g0749 779 Gene3D Tetratricopeptide repeat domain 623 778 IPR011990 GO:0005515
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 709 743 IPR002885 -
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 674 708 IPR002885 -
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 673 IPR002885 -
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Lja1g0749 779 Pfam PPR repeat 495 527 IPR002885 -
Lja1g0749 779 Pfam PPR repeat 325 350 IPR002885 -
Lja1g0749 779 Gene3D Tetratricopeptide repeat domain 209 300 IPR011990 GO:0005515
Lja1g0749 779 Gene3D Tetratricopeptide repeat domain 317 421 IPR011990 GO:0005515
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Lja1g0749 779 SUPERFAMILY HCP-like 332 463 - -
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Lja1g0749 779 SUPERFAMILY HCP-like 406 602 - -
Lja1g0749 779 Gene3D Tetratricopeptide repeat domain 512 622 IPR011990 GO:0005515
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 328 360 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 503 532 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 641 671 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 397 430 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 362 395 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 676 708 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 537 571 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 126 157 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 228 254 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 433 466 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 194 227 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 467 501 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 572 605 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 263 295 IPR002885 -
Lja1g0749 779 TIGRFAM PPR: pentatricopeptide repeat domain 712 744 IPR002885 -
Lja1g0749 779 Pfam PPR repeat family 431 478 IPR002885 -
Lja1g0749 779 Pfam PPR repeat family 225 274 IPR002885 -
Lja1g0749 779 Pfam PPR repeat family 674 721 IPR002885 -
Lja1g0749 779 Pfam PPR repeat family 536 583 IPR002885 -
Lja1g0749 779 Pfam PPR repeat family 359 407 IPR002885 -
Lja1g0749 779 Gene3D Tetratricopeptide repeat domain 422 495 IPR011990 GO:0005515
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Lja1g0749 779 Pfam Pentatricopeptide repeat domain 144 200 IPR002885 -
Lja1g0749 779 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 38 772 - -
Lja1g0749 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0749 328 779 Glycosyltransferase AT1G05670 27.152 6.46e-65 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0749 - - gmx:100786292 1121.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0749 1 7263851 7267126 Lja1g0749 1 7263851 7267126 ECH