Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0745 ATGGCGGAGCACTTGGCATCGATCTTCGGAACAGAGAAAGACAGAGTGAACTGCCCATTCTACTTCAAGATCGGAGCCTGCAGACACGGCGACCGTTGTTCTCGCCTTCACACCAAGCCTACCATCTCCCCCACCCTCGTCCTCTCCAACATGTACCAGAGGCCTGACATGAATCTCAACATCATCACGCAGCCGAATCAGCCGCAGCATCAGCCTCAGCCTCTTGACCCTGACAAGCTTCAGGATCATTTTGATGATTTCTATGAAGATCTGTTTCAGGAGCTTAGCAAGTATGGCCAGATCCAGAGCTTGAATATTTGTGACAATTTGGCTGATCACATGGTTGGCAATGTATATGTTCAGTATAAAGAGGAAGATCATGCTGCTAATGCTCTGATGAATCTTACTGGAAGATTTTATTCAGGTCGACCCATCATTGCCGACTTTTCTCCTGTTACGGATTTTCGAGAAGCTACTTGTAGGCAGTATGAGGAAAATGTATGCAATCGAGGTGGCTACTGCAACTTCATGCACTTAAAGAAAATTAGCAGGGATCTGAGAAGGCGGCTCTTTGGAAGAAATAAGCGGTGGAATGATCGCAGGGGAAGTCGGAGCCGGAGCCGTAGTCGGAGCCCTCCGAGGAATCGGAACTATGAGGAGCGTCCACAGTTTGGTGGTCGTGGTGGTTCTGGTAGAAGAGATTTTGACAGGTCTCATGGCCGCCATGGTAGGAAGCCTAGAAGCCGTAGTCCTCCTCGATTTAGAGGAAAAAGAAGTAGAAGTCCTGCAGGCAGGGATAGGAGCCCCGTCAGAGAAAGTAGTGCAGAAAGGAGGGCTAAAATTGAGCAATGGAACAGGGAGAAGGAACAAGATGACACTGGTCCTAAGAACAATACTAGCGATGATTATGATGAACTCGCGCAAAATGGTAGTGATTCTGGTAACCATCAGATATAG 957 0.4807 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLNIITQPNQPQHQPQPLDPDKLQDHFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRRRLFGRNKRWNDRRGSRSRSRSRSPPRNRNYEERPQFGGRGGSGRRDFDRSHGRHGRKPRSRSPPRFRGKRSRSPAGRDRSPVRESSAERRAKIEQWNREKEQDDTGPKNNTSDDYDELAQNGSDSGNHQI* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0745 318 SMART rrm2_1 73 148 IPR003954 GO:0003676
Lja1g0745 318 MobiDBLite consensus disorder prediction 300 318 - -
Lja1g0745 318 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Lja1g0745 318 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 156 179 IPR000571 GO:0046872
Lja1g0745 318 MobiDBLite consensus disorder prediction 212 237 - -
Lja1g0745 318 Gene3D - 43 151 IPR012677 -
Lja1g0745 318 SUPERFAMILY RNA-binding domain, RBD 83 155 IPR035979 GO:0003676
Lja1g0745 318 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Lja1g0745 318 ProSiteProfiles Zinc finger C3H1-type profile. 154 181 IPR000571 GO:0046872
Lja1g0745 318 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 315 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja1g0745 318 MobiDBLite consensus disorder prediction 197 318 - -
Lja1g0745 318 MobiDBLite consensus disorder prediction 238 258 - -
Lja1g0745 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 145 IPR000504 GO:0003723
Lja1g0745 318 MobiDBLite consensus disorder prediction 259 299 - -
Lja1g0745 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 152 IPR000504 GO:0003723
Lja1g0745 318 PANTHER RNA RECOGNITION MOTIF DOMAIN, EUKARYOTE-RELATED 1 315 - -
Lja1g0745 318 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Lja1g0745 318 SMART c3hfinal6 154 180 IPR000571 GO:0046872
Lja1g0745 318 MobiDBLite consensus disorder prediction 197 211 - -
Lja1g0745 318 PRINTS U2 auxiliary factor small subunit signature 136 160 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja1g0745 318 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja1g0745 318 PRINTS U2 auxiliary factor small subunit signature 171 183 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja1g0745 318 PRINTS U2 auxiliary factor small subunit signature 81 96 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja1g0745 318 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja1g0745 318 PRINTS U2 auxiliary factor small subunit signature 109 131 IPR009145 GO:0000398|GO:0003723|GO:0089701
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0745 Lja-Chr1 7231720 7233890 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0745 K12836 - gmx:100811622 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0745 1 7231720 7233890 Lja1g0745 1 7231720 7233890 ECH