Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0731 ATGGTTTACACCGTCTCGGGAATTCGATTTCCCGTTGTTCCATCGCTGCACAACAAGTCGAGCTTCCGCGGTGGCGATCGGAGGAATGCGGGGGCGGCACCGGTCTCCTTTTTTCTCAAAAAGGACTCGCGCTCTCGGACAGCCCTTGCTGTAAAATTTTCCCATGATTCTGACTCCACATCTTCGGCGATTGCTGAATCTGATAAAGTACTTGTTCCTCAAGATCTAGATAATTCTGCATCCTTGACAGATGAAGTTGAAACTCCTGATATAACCACCGAGGATGTACAGAACTTAGAGGATTTAGCAACGGAAGATGAGAATACATACACTCTTGACGAAGCAGCTAGCAGTTACAGTGAGGTTGACGATGGGCAAGGTTCTGTTGTGTCATCGCTTGTAGATGTTAGCACCAGTGCCCAAACCAAGAAGGCATCAGTTCATTCAGACATGAAAGTAATAGTAATTAATGAAGTTAAACCTAGGATCATTCCTCCGCCTGGCATAGGGCAGAAAATATATGAGATTGATCCATTTTTGCAAACTCACCGCGACCATCTTGATTTCCGTTATGCACAATACAAAAGATTGCGTGAGGAAATTGACAAGTATGAAGGTGGTCTGGATGCATTTTCTCGTGGTTATGAAAAATTTGGCTTCGCACGCAGTGCTACAGGCATAACTTACAGAGAGTGGGCACCTGGAGCTAAGTCAGCAGCATTAGTTGGCGACTTCAATAATTGGAATCCAAATGCAGATGTAATGACCCGGAATGAGTTTGGTGTGTGGGAGATCTTCTTGCCAAACAATGCAGATGGTTCACCAGCAATTCCTCATGGTTCTCGAGTCAAGATCCACATGGATACTCCCTCTGGGATCAAGGATTCAATTTCTGCTTGGATCAAGTTCTCTGTACAGGCTCCAGGTGAAATCCCATATAATGGAATATACTATGATCCCCCAGAGGAGGAAAAATATGTCTTCAGACATCCCCAGCCAAAGAGACCAAAATCACTGAGAATATATGAGTCACACATCGGAATGAGTAGTCCGGAGCCAAAAATTAACACATATGCCAATTTTAGAGATGATGTACTGCCTCGCATTAAAAAGCTTGGCTATAATGCTGTCCAAATTATGGCTATCCAAGAACATTCTTATTATGCTAGCTTTGGGTACCATGTTACGAATTTCTTTGCACCTAGCAGTCGGTTTGGAACTCCAGAAGACCTTAAGTCTCTGATAGACAGAGCCCATGAACTAGGTATCATCGTCCTGATGGATATTGTACATAGCCATGCATCAAATAATACATTGGATGGACTTAACATGTTTGACGGAACTGATGGTCATTACTTCCATTCTGGGTCACGGGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAATTATGGAAGCTGGGAAGTCCTAAGGTATCTGCTTTCAAATGCAAGATGGTGGCTGGATGAATACAAGTTTGATGGGTTTCGATTTGATGGTGTCACATCAATGATGTACACTCATCATGGATTAGAGGTATCTTTTACTGGAAATTACAATGAGTATTTTGGTCTTGCAACTGACGTTGATGCTGTAAATTACCTGATGCTGGTTAATGATCTCATTCATGGGCTCTTCCCTGAGGCTGTTACAATTGGTGAAGATGTCAGTGGAATGCCAACATTCTGCCTTCCTACACGAGATGGTGGGGTTGGCTTTGACTATCGCCTGCAGATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAGAAGAGGGATGAAGACTGGGAAATGGGCGACATAACCCACACACTCACCAACAGAAGGTGGCTGGAAAAATGTGTGGCTTATGCTGAAAGTCATGACCAAGCCTTGGTTGGTGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGATTTTATGGCTTTAGACAGACCATCTACTCCTCTTGTAGATCGTGGTATAGCATTACACAAAATGATTAGGCTTATTACTATGGGCCTCGGTGGTGAAGGGTATTTGAACTTTATGGGGAATGAATTCGGCCATCCTGAATGGATTGATTTTCCAAGGGGTGAGCAACGTCTTCCTAATGGCTCAGTAATTCCCGGGAATAACAACAGTTATGATAAATGCAGGCGTAGATTTGACTTGGGGGATGCAGAGTATCTAAGATATCATGGGTTGCAAGAATTTGATCGAGCTATGCAGCATCTAGAAGAAAGATTTGGTTTCATGACTTCTGAACACCAATATATTTCACGGAAAAATGAAGGTGACAAAGTTATAGTCTTCGAAAGGGGCAACCTCGTCTTCGTCTTCAATTTTCACTGGAACAACAGCTATTATGATTACAGAATTGGGTGTTTACACCCGGGCAAATATAAGATTGCCTTGGATTCAGATGATCCCTCGTTTGGTGGCTTCAATAGGCTCAATCACGCTGCTGAGTACTTCACCACTGATGGATGGTATGATGACCGACCTCGATCTTTTCTAGTCTATGCACCTTCTAGAACAGCAGTGGTGTATGCCCTTGCAGATGGCATTGAACTAGAGCCAGAAGTTGAACCTTGA 2586 0.4331 MVYTVSGIRFPVVPSLHNKSSFRGGDRRNAGAAPVSFFLKKDSRSRTALAVKFSHDSDSTSSAIAESDKVLVPQDLDNSASLTDEVETPDITTEDVQNLEDLATEDENTYTLDEAASSYSEVDDGQGSVVSSLVDVSTSAQTKKASVHSDMKVIVINEVKPRIIPPPGIGQKIYEIDPFLQTHRDHLDFRYAQYKRLREEIDKYEGGLDAFSRGYEKFGFARSATGITYREWAPGAKSAALVGDFNNWNPNADVMTRNEFGVWEIFLPNNADGSPAIPHGSRVKIHMDTPSGIKDSISAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFRHPQPKRPKSLRIYESHIGMSSPEPKINTYANFRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEDLKSLIDRAHELGIIVLMDIVHSHASNNTLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLEVSFTGNYNEYFGLATDVDAVNYLMLVNDLIHGLFPEAVTIGEDVSGMPTFCLPTRDGGVGFDYRLQMAIADKWIEILKKRDEDWEMGDITHTLTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPLVDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGEQRLPNGSVIPGNNNSYDKCRRRFDLGDAEYLRYHGLQEFDRAMQHLEERFGFMTSEHQYISRKNEGDKVIVFERGNLVFVFNFHWNNSYYDYRIGCLHPGKYKIALDSDDPSFGGFNRLNHAAEYFTTDGWYDDRPRSFLVYAPSRTAVVYALADGIELEPEVEP* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0731 861 Pfam Alpha amylase, catalytic domain 366 437 IPR006047 GO:0005975
Lja1g0731 861 Gene3D - 751 854 IPR013780 -
Lja1g0731 861 Pfam Alpha amylase, C-terminal all-beta domain 755 848 IPR006048 GO:0003824|GO:0005975|GO:0043169
Lja1g0731 861 CDD E_set_GBE_euk_N 225 318 - -
Lja1g0731 861 SMART aamy 356 716 IPR006047 GO:0005975
Lja1g0731 861 SUPERFAMILY (Trans)glycosidases 330 745 IPR017853 -
Lja1g0731 861 Gene3D Glycosidases 177 746 - -
Lja1g0731 861 CDD AmyAc_bac_euk_BE 322 737 - -
Lja1g0731 861 Gene3D Immunoglobulins 213 325 IPR013783 -
Lja1g0731 861 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 217 299 IPR004193 GO:0004553|GO:0005975
Lja1g0731 861 SUPERFAMILY Glycosyl hydrolase domain 751 849 - -
Lja1g0731 861 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 18 852 IPR037439 GO:0003844|GO:0005978
Lja1g0731 861 PIRSF GlgB 93 859 IPR037439 GO:0003844|GO:0005978
Lja1g0731 861 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 2-1, CHLOROPLASTIC/AMYLOPLASTIC 18 852 - -
Lja1g0731 861 SUPERFAMILY E set domains 211 320 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0731 Lja-Chr1 7043004 7060473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0731 29 851 Glycoside Hydrolase AT5G03650 77.400 0.0 1338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0731 K00700 - gmx:100816963 1526.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0731 1 7043004 7060473 Lja1g0731 1 7043004 7060473 ECH