Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0728 ATGGCTTCGCTATTAATGCCCGGTGATGATCTGGCCATTTCAGCCAGTAGTCGCCGGAGCTGGACTTCCACGCCGAGCTTCCGGGATGTCTGGACGGCGCCTCCGGATGTGTTTAACCGGAGCGACCGCCACACGCAGGAGGACGACGAGTACCACCTCACTTGGGCCGCCATTGATCGCTTACCGACGTTCGAGCGCATGAGGAAAGGAGTGGTGAAGCACGTGCTGGAAAATGGAAAGGTTGTGCATGATGAGGTTGATGTTGCTAAGCTTGGCTTACATGACAAGAAGATTCTCTTGGAAAGCATTCTCAAGACTGTGGAGGAAGATAATGAGAAGTTTCTCCGGAGACTTAGAGATAGACAAGATAGGGTGGGGATTGAAATTCCAAAAATTGAAGTCCGGTTTGAGAATTTATCTGCAGATGGAGATGTCTATGTTGGGAGCAGAGCTCTTCCTACTCTGCTTAATGTTACTTTAAACGCTTTTGAGAGTGTTCTGGGGTTGTTTCACCTTGCACCGTCCAGGAAGAGGGAGATTCAGATTCTCAAAGATGTTAGCGGAATAATCAAACCTTCAAGGATGACTCTCCTTCTGGGTCCTCCAGGTTCTGGGAAAACAACATTGCTTCTGGCACTTTCAGGAAAACTTGATCCTAGTTTGAGGGTCTCTGGGAAAGTTACTTACTGTGGACATGAGATGAATGAATTTGTGGCTCGGAAAACCTGTACCTATATTAGTCAACATGACATTCACTCTGGAGAAATGACTGTGAGAGAGACATTAGATTTTTCGACGCGGTGTCTAGGGGTTGGCACAAGGTATGAAATGTTGACAGAACTATCAAGAAGGGAGAGAGAAGCAGGAATTAAGCCAGACCCTGAAATTGATGCATTCATGAAAGCTATAGCATTGTCAGGCCAAAGATCCAGTTTGGTAACTGATTATGCTCTCAAGGTACTTGGGTTGGATATATGTGCTGATGTAATGATTGGTGATGAAATGAGAAGGGGTATCTCTGGTGGACAGAAGAAGAGAGTAACAACAGGTGAGATGCTGGTAGGACCTGCAAAGGCACTCTTCATGGATGAAATATCAACAGGATTGGACAGTTCCACCACCTTCCAGATATGCAAGTTCATGAGACAAATGGTTCATATCATGGATGTAACCATGGTGATTTCTCTTTTACAGCCAGCACCAGAGACATTTGAACTCTTCGACGACATTATCCTGCTTTCAGAAGGTCAAATTGTATACCAAGGTCCACGAGAGAACGTGCTAGAGTTTTTTGAGTACATGGGTTTCAAGTGTCCTGAAAGAAAAGGAGCTGCTGACTTTCTACAAGAAGTAACATCCAAGAAAGACCAGGAACAATATTGGTTTAGAAAAGATGAGCCTTATAGATATGTTTCAGTTCCTGAATTTGTACAGTCCTTTCATTCGTTTCACATTGGAGAGCAACTTGTGACAGAGCTTGGAGTTCCCTATGATAAGAGCCAAACACACCCAGCTGCATTAGTTAAAGACAAGTACGGTATATCAAACTGGGAACTATTTAAGGCATGCTTTTCAAGAGAGTTGCTGCTTATGAAGCGTAGTTCTTTTGTTTATATATTCAAAACAACACAGGTTACAATCATGTCTATCATTACTTTAACTGTGTTCTTTAGAACAAAAATGACACCGGGAACTGTTCAAGGCGGACAAAAGTTTTATGGAGCATTGTTCTTTACTCTAATAAATATGATGTTTAATGGGATGGCAGAACTAGCCATGACTGTTTTTAGGCTTCCTGTCTTCTACAAACAAAGGGATTTCATGTTCTACCCTGCGTGGGCATTTGGGCTACCTATATGGATTCTAAGGATTCCTCTCTCCCTTGTGGAATCAGGGATATGGATTGTCCTTACATATTATACAATTGGGTATGCTCCTTCTGCAAGCAGATTTTTCCGACAATTCTTGGCATTATTTGGCATTCATCAGATGGCTCTCTCTCTCTTTCGGTTCATTGCTGCAGCTGGCAGAACACTAGTGGTTGCTAATTCAGTGGGTACCTTGTCATTGCAAGTGGTATTTGTGCTAGGAGGTTTTATTGTTGCCAAAGATGCAATTGAGCCATGGATGATATGGGGCTACTATATATCTCCTATAATGTATGGCCAGAATGCCATAGCAATGAATGAATTCTTAGATAAAAGATGGAGTGAACCAAATACAGACTCTAGAATTGATGCACCTACAATTGGAAAAGTACTTCTCAAATCTAGAGGCTTATATACAGAAGACTATTGGTATTGGATCTGCATTGGAGCCTTGTTTGGGTTTGCTCTTCTTTTTAACCTTTTGTTCATTGCTGCATTGACTTATCTGAATCCTTTTGGAGATTCAAAAGCGGTTATTGCGGATGGAGGTGACAAGAAGAATAAAAGTTCATCCTCTAGCCAGCATATCCTTGAAGGTTCAGACATTGAATTGAAGAGTTCTTCAGAAATTACTGGTTCTTCGAACCAAGAACCGAGAAGAGGAATGGTGCTACCGTTTCAACCTCTTTCAATGACATTCAATCATATTAGCTACTATGTAGACATGCCAGCAGAAATGAGGAATCAAGGAATCAATAAAGATCGACTTCAATTACTACAAGATGTAAGTGGCGCTTTTAGACCAGGCATATTGACAGCACTTGTTGGTGTTAGTGGTGCTGGGAAGACAACCCTCATGGATGTATTAGCAGGAAGGAAAACAAATGGGTATATTGAAGGAAGTATCAGCATCTCAGGTTACCCAAAGAACCAAGAAACATTTGCTCGAGTTAGCGGTTACTGCGAACAGAATGACATTCATTCTCCACATGTTACTGTCTATGAATCACTATTATTTTCAGCATGGCTTCGCCTTCCTTCGGAAGTAAAGACACAAACACGAAAGATGTTTGTTGAAGAAGTTATGGAATTGGTTGAACTTAAACCAATTAGAGATGCTATAGTGGGACTTCCAGGTGTGGATGGTTTATCAACAGAACAGAGGAAAAGACTTACTATTGCTGTGGAGCTCGTTACCAACCCTTCAATCATCTTCATGGATGAACCAACTTCAGGTCTTGATGCCAGAGCTGCTGCTATTGTTATGCGAACTGTGAGAAACACTGTAGACACGGGGAGAACCGTTGTATGCACAATTCACCAACCAAGCATAGACATTTTTGAAGCTTTTGATGAGTTAATGTTGATGAAAAGAGGAGGACAAGTTATTTATGCCGGACCTCTTGGTCGCCACTCACATAAGCTCGTAGAATATTTCGAAGCTATCCCAGGGGTTTCAAAAATAAAGGATGGTTATAATCCAGCAACATGGATGCTTGAAATCAGCTCTCCTTCAGTTGAGACTCAACTAAATGTAGATTTTGCAGAGATTTATGCTAAATCTAACCTTTACCAGAGGAATCAAGAACTTATAGCGGAGCTTAGTGTTCCAGCACCAGATTCAAAGGACTTGTACTTCCAAACCAAACATTCCCAATCATTTTTTGTTCAGTTCAAAGCTAACTTCTGGAAACAATACTGGTCCTATTGGAGAAATCCTCAATATACTGCGGTCCGATTTATCATGACAACGCTCATGGGAGTATTGTTTGGTCTTATATTCTGGGATCAGGCTCAAAAGATCCACAAACAACAAGATTTATTGAATCTTTCGGGAGCCATGTATTCTGCTGTGCTTTTTCTTGGAGCAACGAATGCCATGGGAGTGCAACCTGTTGTTTCCATTGAAAGAACTGTCTTCTATCGTGAAAGAGCGGCAGGGATGTATTCTGCATTGCCCTATGCATTTGGCCAGATGGCAGTGGAGGCATTTTATATTGCAATTCAAACAGGCGTTTACTCTCTTATCCTTTACTCCATGATTGGTTTTGATTGGAAGGCAGTGAACTTCTTCTGGTTCTACTTCTTTATACTATTGAGTTTTATGTACTGCACGTTTTATGGGATGCTGCTTGTTGCACTAACACCTGGTCACCAAGTTGCTGGCATTTGTATGTCCTTCTTCTTCAGCTTTTGGAACTTGTTCTCTGGGTTTATCATTCCTAGGACACAAATCCCTATATGGTGGAGATGGTACTATTGGGCTTCTCCTGTTGCATGGTCACTGAATGGCCTTATTACCTCACAACTGGGTAACAAAGATGCTGAAGTGGTGATACCAGGAGATGGAAGCATGACAGTGAAGCAATTCCTTAAAGAGAACTTGGGTTATCATTATGACTTCCTTCCAGCTATTGCTGCTGCTCATGTAGGCTGGGTTCTCCTATTCGGGTGTGGCTTTGCATTTGGCATCAAATTCCTAAACTACCAAAAGAGATAG 4368 0.4192 MASLLMPGDDLAISASSRRSWTSTPSFRDVWTAPPDVFNRSDRHTQEDDEYHLTWAAIDRLPTFERMRKGVVKHVLENGKVVHDEVDVAKLGLHDKKILLESILKTVEEDNEKFLRRLRDRQDRVGIEIPKIEVRFENLSADGDVYVGSRALPTLLNVTLNAFESVLGLFHLAPSRKREIQILKDVSGIIKPSRMTLLLGPPGSGKTTLLLALSGKLDPSLRVSGKVTYCGHEMNEFVARKTCTYISQHDIHSGEMTVRETLDFSTRCLGVGTRYEMLTELSRREREAGIKPDPEIDAFMKAIALSGQRSSLVTDYALKVLGLDICADVMIGDEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQICKFMRQMVHIMDVTMVISLLQPAPETFELFDDIILLSEGQIVYQGPRENVLEFFEYMGFKCPERKGAADFLQEVTSKKDQEQYWFRKDEPYRYVSVPEFVQSFHSFHIGEQLVTELGVPYDKSQTHPAALVKDKYGISNWELFKACFSRELLLMKRSSFVYIFKTTQVTIMSIITLTVFFRTKMTPGTVQGGQKFYGALFFTLINMMFNGMAELAMTVFRLPVFYKQRDFMFYPAWAFGLPIWILRIPLSLVESGIWIVLTYYTIGYAPSASRFFRQFLALFGIHQMALSLFRFIAAAGRTLVVANSVGTLSLQVVFVLGGFIVAKDAIEPWMIWGYYISPIMYGQNAIAMNEFLDKRWSEPNTDSRIDAPTIGKVLLKSRGLYTEDYWYWICIGALFGFALLFNLLFIAALTYLNPFGDSKAVIADGGDKKNKSSSSSQHILEGSDIELKSSSEITGSSNQEPRRGMVLPFQPLSMTFNHISYYVDMPAEMRNQGINKDRLQLLQDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRKTNGYIEGSISISGYPKNQETFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLPSEVKTQTRKMFVEEVMELVELKPIRDAIVGLPGVDGLSTEQRKRLTIAVELVTNPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGRHSHKLVEYFEAIPGVSKIKDGYNPATWMLEISSPSVETQLNVDFAEIYAKSNLYQRNQELIAELSVPAPDSKDLYFQTKHSQSFFVQFKANFWKQYWSYWRNPQYTAVRFIMTTLMGVLFGLIFWDQAQKIHKQQDLLNLSGAMYSAVLFLGATNAMGVQPVVSIERTVFYRERAAGMYSALPYAFGQMAVEAFYIAIQTGVYSLILYSMIGFDWKAVNFFWFYFFILLSFMYCTFYGMLLVALTPGHQVAGICMSFFFSFWNLFSGFIIPRTQIPIWWRWYYWASPVAWSLNGLITSQLGNKDAEVVIPGDGSMTVKQFLKENLGYHYDFLPAIAAAHVGWVLLFGCGFAFGIKFLNYQKR* 1456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0728 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 870 1091 IPR027417 -
Lja1g0728 1455 SMART AAA_5 192 417 IPR003593 -
Lja1g0728 1455 SMART AAA_5 891 1083 IPR003593 -
Lja1g0728 1455 Pfam ABC-2 type transporter 519 731 IPR013525 GO:0016020|GO:0140359
Lja1g0728 1455 Pfam ABC-2 type transporter 1180 1392 IPR013525 GO:0016020|GO:0140359
Lja1g0728 1455 Pfam ABC-transporter N-terminal 108 158 IPR029481 -
Lja1g0728 1455 PANTHER ABC TRANSPORTER G FAMILY MEMBER 34-RELATED 22 1455 - -
Lja1g0728 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 440 IPR027417 -
Lja1g0728 1455 Pfam ABC transporter 183 365 IPR003439 GO:0005524
Lja1g0728 1455 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 854 1106 IPR003439 GO:0005524
Lja1g0728 1455 Pfam Plant PDR ABC transporter associated 736 802 IPR013581 -
Lja1g0728 1455 Gene3D - 868 1102 IPR027417 -
Lja1g0728 1455 Coils Coil 104 124 - -
Lja1g0728 1455 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 167 440 IPR003439 GO:0005524
Lja1g0728 1455 Gene3D - 170 471 IPR027417 -
Lja1g0728 1455 CDD ABCG_PDR_domain2 851 1089 IPR034003 -
Lja1g0728 1455 Pfam ABC-2 type transporter 1063 1133 IPR043926 GO:0140359
Lja1g0728 1455 Pfam ABC-2 type transporter 398 451 IPR043926 GO:0140359
Lja1g0728 1455 Pfam ABC transporter 882 1034 IPR003439 GO:0005524
Lja1g0728 1455 CDD ABCG_PDR_domain1 172 422 IPR034001 -
Lja1g0728 1455 PANTHER ATP-BINDING CASSETTE TRANSPORTER 22 1455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0728 Lja-Chr1 6999724 7008047 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0728 K08711 - gmx:100786482 2454.09