Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0727 ATGGAGGTCTCCGATGACGATGATCACGTTTTCCTGGTTTGCACAAACCCCGATGATCCAATCGATGAAACCACCGAGACTCTCAACCAAGAGATTCTCGTGTCAACTACAGATCTCCTCGTTTGGGATTCACCAGCGATTCTCAGTTTCCAAACAATCAAAGTTCAGGCACATCGCAGTAGGCTCATTGAACAATCTCTGTATTTCAGAGGCCTCCTCAGTGGGAGCTTCAGTGAATCATGCTTGGGCTCTATCACGATCAGTTGGAATGTGCGTGTGTTTATGCAAATTCTTAAGCATATGTATGGTGTCTCATTGGATATTGCCATGGATAACATCATCCCTCTTTATGAGGGTGCGCTTTATTTTGGAGTGGAGACACTTCTGTTGAAGTGTGAGACTTGGCTTTCTGAGGTATTCTCACCCAAAGGATTTCAATCAACACAAATACAAATAGAGGATTTGATCGAAACTTGGAAATTTGGTTTGGAGCACGGAAGTGAATTTATCCTGAACTTGTGTGTGGGCTACCTAGCAAGAAATTTTATGTGGGCAATGCATAGCAACTCTTTTAGAAAAATTCCATATGACCTGCTGTTATCTTCAGTGAAGCACTCTCACTTGACTGTTGACAGTGAGATGCATCTCTCTGATGCACTTCTTTTCTGGCTCGAAAGTAACATGGAAAGTTTGGATAGGCCATGCGAAAATGAAGGCAACTGCAGTGGAATTTTAAAACAGATTCGTGTGGGCCTTTTGCCTTTGTGGTTTGCTGCAGGAAAAAGAAACTCTTTTTATTTTAGGCTGCTGGCTGAGGAAAGCCTTGATTCAATTTTCAGAATTCTACCTATGGGCTCACTTGAAATTTTTGGCTACAGTGACTTGCAACATCTCAGGATTCGACTGACAGAATATTCGAAGAGGGTGAACCTTTCCAATTGTCCACAAATAACATCTGAAATACTCCTTTTGTCACTCATCCCTTCATCATACTTAACGGATCCCATGGGAAAGAAGATTATTGAACAGTTCATTGCTAATTCTGGACATCCTATTAGAGATCAATATGCATTCCCACAGAAACTGTTAAACACCTTTACCTTTGAAGTAGTCCAGGAGCTGGATATCTCAAAGTGTCGAAGATTGCTTATTGAACAAGCTGTTGATTACTTCAGCCAATCCTTTCCTTCTTTAAGAATATTGAAAGCAACTTATCTTTTGAGCATCAGGACAACCAGTTTCCTTAAATCACTGGAGAAGTGCCCTTTGATCTGTGAAATTGATTTGACTGTTGATACTACTCCAATAATACCAGCATCAGTTACAGTTTTATCCTCTAGTCATGCTGTGGTACCACTGGTACCGGAGAAGACCTCAAGTCTTAAATACCAAGCACTGGAAACCATGTCTATTCATGAATCTAGGCCTCCACTTTCTAATGTTACAAAACTCACATTGGAAGGAAGAACTGATGTCAGTGATTTGACTCTCCAGCATATCTCCAAATTCTGTGTTTCATTATGTCACCTGAATATTAAAGGATGCACTTCGGTCACTGATATTGGCATATCAGATCTCATACGTGGATGTAAAAAACTTAATTCAATTGTGGTTTGTGATACTTCATTTGGGATAAATTCAGTTCAAGCTCTTTGCTCAACTATTTCTGATAGTGGTGACTTTCCCTCTCTTCATTCTAGAGACGAGCATTTGAATTCTGTGGTGTCTAATCTTCAAACACTGCATATGGGTGGCTGCAGAGATATTTCTGAGTCATCTCTACAAGAACTTATGTCTCAAACACAAGTTTTGAAGAGTTTGTGCCTGAGAGGGACTGACCTGGTTGACCAGGCTCTATATAATTACCGAGGTTCTTCCTTGAAGATGCTTGATGTTTCAAATACCAAGATTTCTGGAGCTGCATTAACATATGTTGTTCATCGAAATCCAAGTTTGAAATGTCTGAAAGCAAGAGGTTGTAGAAATTTGTTTCAAGGGAACAGTTTTAACGAAAAGAGAGGATATATCTTTTCCTCTTTGCATGAAGAACTGCATGCTGAGTTAGGAAATATGTGTAGATTGGATGAAATTGAATTTGGTTGGGGTGTTTCTTCCTTCTCTCTTAGTGCTCTAGAACCTGCATTGATGTCATTGAAGACCATCAATATAGGTTTAGGTGGGATGTTAGGTGAAGAGGCATTGAGACAATTGCCTGCAATCTGTCCATTGCTCGAAACAATAATCCTTCATTTTCAGGTAATATCTGATATCATCGTGACAAAATTAGTTAACTCATTGTTAAACTTGCAAGAATTAGCTCTGTGCTATTGTTTTGGTGAGATATCCATGTCAAGCTTTGAATTTCTCATGCAAAATCTAAGAAAGCTGAGGCTTGAAAGAGTAACCCCGTGGATGACCAACGGTGATTTGGTTATTCTAACACAAAACTGCAGAAATTTGGTTGAGCTTTCATTGTTGGGATGTCCTCTTCTTAACTCAGATTCTCAACAGATAATTTCTCGAGGATGGCCAGGTTTGGTCTCTATTTATTTAGAGGAATGTGGAGAAATAACAGCAAATGGGGTCTCTGGTCTTCTTGACTGCAAAGCTCTTGAAGATCTCCTGTTGCGTCATAATGGCCCTGGGCTACAAAGAAACTTAGTTTTTCATGCTGCTTCAGAGATGCCATTGCTTCGAAAATTGTCACTGGATATATGTGATGCAAGTGAAGGTGATTTTGACATTCCAAATTATGCAGATAGACACTTCTTAAGCACCTTGAAGATAGCAAGATGCAAATCTCAAAGATGTGCATTTAATCTCCCAGACATTGCCCCTAGGGGTCGTAGAAGATCTGTGCACGTTGAAACGCTGGTGCTTGTGTGGAACAGCAGAGGTCTCATCAGAACAGTGGTGAAGGAAAGGCTTTAG 2931 0.4016 MEVSDDDDHVFLVCTNPDDPIDETTETLNQEILVSTTDLLVWDSPAILSFQTIKVQAHRSRLIEQSLYFRGLLSGSFSESCLGSITISWNVRVFMQILKHMYGVSLDIAMDNIIPLYEGALYFGVETLLLKCETWLSEVFSPKGFQSTQIQIEDLIETWKFGLEHGSEFILNLCVGYLARNFMWAMHSNSFRKIPYDLLLSSVKHSHLTVDSEMHLSDALLFWLESNMESLDRPCENEGNCSGILKQIRVGLLPLWFAAGKRNSFYFRLLAEESLDSIFRILPMGSLEIFGYSDLQHLRIRLTEYSKRVNLSNCPQITSEILLLSLIPSSYLTDPMGKKIIEQFIANSGHPIRDQYAFPQKLLNTFTFEVVQELDISKCRRLLIEQAVDYFSQSFPSLRILKATYLLSIRTTSFLKSLEKCPLICEIDLTVDTTPIIPASVTVLSSSHAVVPLVPEKTSSLKYQALETMSIHESRPPLSNVTKLTLEGRTDVSDLTLQHISKFCVSLCHLNIKGCTSVTDIGISDLIRGCKKLNSIVVCDTSFGINSVQALCSTISDSGDFPSLHSRDEHLNSVVSNLQTLHMGGCRDISESSLQELMSQTQVLKSLCLRGTDLVDQALYNYRGSSLKMLDVSNTKISGAALTYVVHRNPSLKCLKARGCRNLFQGNSFNEKRGYIFSSLHEELHAELGNMCRLDEIEFGWGVSSFSLSALEPALMSLKTINIGLGGMLGEEALRQLPAICPLLETIILHFQVISDIIVTKLVNSLLNLQELALCYCFGEISMSSFEFLMQNLRKLRLERVTPWMTNGDLVILTQNCRNLVELSLLGCPLLNSDSQQIISRGWPGLVSIYLEECGEITANGVSGLLDCKALEDLLLRHNGPGLQRNLVFHAASEMPLLRKLSLDICDASEGDFDIPNYADRHFLSTLKIARCKSQRCAFNLPDIAPRGRRRSVHVETLVLVWNSRGLIRTVVKERL* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0727 976 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN FBL11 59 870 - -
Lja1g0727 976 SMART LRR_CC_2 530 554 IPR006553 -
Lja1g0727 976 SMART LRR_CC_2 478 503 IPR006553 -
Lja1g0727 976 SMART LRR_CC_2 843 868 IPR006553 -
Lja1g0727 976 SMART LRR_CC_2 575 600 IPR006553 -
Lja1g0727 976 SMART LRR_CC_2 817 842 IPR006553 -
Lja1g0727 976 SMART LRR_CC_2 766 792 IPR006553 -
Lja1g0727 976 SMART LRR_CC_2 504 529 IPR006553 -
Lja1g0727 976 Gene3D Ribonuclease Inhibitor 286 554 IPR032675 -
Lja1g0727 976 Gene3D Ribonuclease Inhibitor 558 932 IPR032675 -
Lja1g0727 976 PANTHER UNCHARACTERIZED 59 870 - -
Lja1g0727 976 SMART BACK_2 155 263 IPR011705 -
Lja1g0727 976 SUPERFAMILY POZ domain 48 137 IPR011333 -
Lja1g0727 976 SUPERFAMILY RNI-like 684 932 - -
Lja1g0727 976 Pfam BTB And C-terminal Kelch 157 257 IPR011705 -
Lja1g0727 976 Pfam BTB/POZ domain 48 137 IPR000210 GO:0005515
Lja1g0727 976 SMART BTB_4 44 140 IPR000210 GO:0005515
Lja1g0727 976 SUPERFAMILY RNI-like 293 661 - -
Lja1g0727 976 CDD BTB_POZ_ZBTB_KLHL-like 47 123 - -
Lja1g0727 976 Gene3D Potassium Channel Kv1.1; Chain A 44 168 IPR011333 -
Lja1g0727 976 CDD BACK 152 201 - -
Lja1g0727 976 ProSiteProfiles BTB domain profile. 44 110 IPR000210 GO:0005515
Lja1g0727 976 Gene3D - 176 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0727 Lja-Chr1 6973315 6984975 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0727 - - lja:Lj4g3v1199760.2 1616.67