Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0703 ATGAAGAAGAAGTTACTGCAACCAATCACAAAACCAGCGGTTTCTTCACTCCTCAACCCTTTCCTCCCACCGCCACCAGAAGCAGTGGCATCTCTTCCTCCTCCTCCAACTCTCACTCTCACTCCCACCCCTCACTACGACCGTTTCCTCCACTTCCTCAGCAACCACCTCTCTCCACCTTTCACCGCCGACACCCTCGTCCACTTCCTCAAATCGAAGCTCCACCACCACCCTTCCTTCACCCACTACGACTTCCACATCTTCACCTGGGCCTCTTCCCTCCCCACCTTCCGCCACACCCACTCCTCCTTCGAATGGATGGCCCGCACCCTCGCCGTCACCCAGCGTTTCCCCCACCTCCGCACCCTCCTCACCTTCATCGCCTCCAACCCTTGCCCCTGCTCCCCCGCCATCTTCTCTTGCCCCAGAACCGAACCCATCTTCCGTTTCGCCATTCACGCTTTCTGCAATGCCTCCAAGCTCGACGACGCCCTCTTCGCCTTTCGCTCAATGCGGAGGTTGATCGATGGCAGGCCACATGTCTCCGTCTGCAACATTCTGATTCACGGGTTTGTCAAATCCGGTAGGCACGATAAAGCTCTTGAGTTTTACAATGAGATGGTTAGAGATAGGGTGAAGCCTGATGTTTTTACTTTCAATATCTTGATCAGTAGTTATTGTAAGAATTCGCAGTTCGGATTGGCCTTGGAGATGTTTAAGGAGATGAAGAAAATGGGGTGTGATCCAAATGTGGTTACTTTCAATACTTTGATTAAGGGGTTGTTTAGGGAGGGAAGGGTTGAGGAAGGGATTGGGATGGCTCATGAGATGATTGAATTGGGGTGTCAATTTTCCATTGTCACTTGTGAGATTTTGGTTCATGGGCTTTGTAAGGGAGGAAGGGTTTTGCAGGCGTGTGAAATATTGGCGGATTTTTCCAAGAGGGGGGTTTTGCCGAAAGAGTATGATTATTTTGATTTGGTGGAAGCTTTGTGTTGGGAAGGAAATGTTGATAGAGCCTTGGAGCTTATTTATGAGTTGTGGGATAGAGCAAATGTTCCGAGTTTGATTGCTTGTACTGTGATGGTTGATGGTTTGAGAAGGTCGGGGAAGACTAGAGAAGCTCGGAGATTGGTGGAAAAAATGCTTACAGAGGGTATGGTACTGGATGTTGTGACTTTCAATGGTGTCCTTCAAGATATTTGTAACAAGCAAAGGACGGAAGAAGCAAATAATTTGAGATTGCTTGCTACAAGCAAGGGTTTGGAACCTGATTGCATGACATATGAAATTTTGGTTACTGGGTATGCAGGAGAGGGCAGTCAAAAGGAAGGAGAGTTAGTGGTGGATGAAATGTTGGATAGGGGGTTTATACCTGATCTTGCCTCTTATAACAGGTTGATGGATGAGCTATCTAAGCGTCAACGCTCTGCATGCCTTCGACTCAACAAATTTGGCCGCTGA 1464 0.4843 MKKKLLQPITKPAVSSLLNPFLPPPPEAVASLPPPPTLTLTPTPHYDRFLHFLSNHLSPPFTADTLVHFLKSKLHHHPSFTHYDFHIFTWASSLPTFRHTHSSFEWMARTLAVTQRFPHLRTLLTFIASNPCPCSPAIFSCPRTEPIFRFAIHAFCNASKLDDALFAFRSMRRLIDGRPHVSVCNILIHGFVKSGRHDKALEFYNEMVRDRVKPDVFTFNILISSYCKNSQFGLALEMFKEMKKMGCDPNVVTFNTLIKGLFREGRVEEGIGMAHEMIELGCQFSIVTCEILVHGLCKGGRVLQACEILADFSKRGVLPKEYDYFDLVEALCWEGNVDRALELIYELWDRANVPSLIACTVMVDGLRRSGKTREARRLVEKMLTEGMVLDVVTFNGVLQDICNKQRTEEANNLRLLATSKGLEPDCMTYEILVTGYAGEGSQKEGELVVDEMLDRGFIPDLASYNRLMDELSKRQRSACLRLNKFGR* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0703 487 Pfam PPR repeat 287 317 IPR002885 -
Lja1g0703 487 Pfam PPR repeat 152 173 IPR002885 -
Lja1g0703 487 Pfam PPR repeat 358 386 IPR002885 -
Lja1g0703 487 Pfam PPR repeat 183 211 IPR002885 -
Lja1g0703 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Lja1g0703 487 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 20 475 - -
Lja1g0703 487 PANTHER ATPASE EXPRESSION PROTEIN 3 20 475 - -
Lja1g0703 487 TIGRFAM PPR: pentatricopeptide repeat domain 358 391 IPR002885 -
Lja1g0703 487 TIGRFAM PPR: pentatricopeptide repeat domain 428 460 IPR002885 -
Lja1g0703 487 TIGRFAM PPR: pentatricopeptide repeat domain 287 319 IPR002885 -
Lja1g0703 487 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Lja1g0703 487 TIGRFAM PPR: pentatricopeptide repeat domain 183 216 IPR002885 -
Lja1g0703 487 TIGRFAM PPR: pentatricopeptide repeat domain 252 283 IPR002885 -
Lja1g0703 487 Gene3D Tetratricopeptide repeat domain 277 350 IPR011990 GO:0005515
Lja1g0703 487 Gene3D Tetratricopeptide repeat domain 60 207 IPR011990 GO:0005515
Lja1g0703 487 Gene3D Tetratricopeptide repeat domain 208 276 IPR011990 GO:0005515
Lja1g0703 487 Gene3D Tetratricopeptide repeat domain 354 483 IPR011990 GO:0005515
Lja1g0703 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Lja1g0703 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Lja1g0703 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Lja1g0703 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Lja1g0703 487 Pfam Pentatricopeptide repeat domain 419 469 IPR002885 -
Lja1g0703 487 Pfam PPR repeat family 214 262 IPR002885 -
Lja1g0703 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0703 147 476 Glycosyltransferase AT1G05670 30.000 2.38e-47 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0703 - - aprc:113860936 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0703 1 6772143 6775383 Lja1g0703 1 6772143 6775383 ECH