Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0696 ATGGAAGCTGTACTAGCATCTCGCCATTTCTCCACTCCTACCCATTCTTCCTCTCACAACCGAACAGTGTGCTCTTCTTCTCCTTCTCCCAATTCACTCAAGCTTTCATCTCCTTGGACCAACGCTTCCATTTCTTCCAGGAATTCATTCACGAAAGAGATATGGGGCTGGGTGCAGGCAAAGAGCGTGGCCGTCAGAAGAAGAAGGGACATGCCCGGAGTGGTGAGGGCTGAGATGTTCGGACAGTTAACCACTGGCCTTGAAGCTGCTTGGAACAAGCTCAAAGGAGAAGAGGTTTTGACCAAAGAGAATATTGTGGAGCCTATGAGAGATATTAGGAGAGCCCTTTTAGAAGCTGATGTTAGCCTTCCTGTTGTGAGAAGGTTTGTGCAATCGGTCAGCGATCAGGCTGTAGGTGTTGGAGTGATTCGAGGTGTGAAACCAGATCAGCAATTGGTTAAGATTGTACATGAAGAACTTGTAAAATTGATGGGCGGAGAAGTCTCTGAACTGGCTTTTGCAAAGTCTGGGACCACTGTCATCTTATTGGCTGGACTCCAGGGAGTTGGGAAGACAACTGTTTGTGCTAAGCTGTCAAATTATCTAAAGAAACAGGGGAAGAGTTGCATGCTAGTCGCTGGGGATATTTACAGACCGGCTGCTATTGACCAGCTTACTATTTTGGGTAAACAGGTGGGTGTGCCTGTCTATACAGCAGGGACCGATGTTAAACCTTCAGAAATTGCTAGACAAGGTTTAGAAGAGGCCAAAAAGAAGAAAATTGATGTGGTTATTGTTGACACTGCTGGTAGGCTGCAGATAGACAAAGCTATGATGGATGAGTTAAAAGAAGTTAAGAAGTCATTGAATCCAACAGAAGTCTTGCTAGTTGTGGATGCAATGACAGGGCAAGAAGCAGCAGCCTTGGTGACTACTTTCAATCTTGAGATTGGAATAACAGGTGCCATATTGACAAAGCTAGATGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGGAAGCCAATTAAGCTGGTAGGACGAGGGGAGCGTATGGATGATCTTGAACCTTTCTACCCTGATCGAATGGCAGGACGTATACTAGGAATGGGAGATGTTCTTTCATTTGTAGAGAAGGCACAAGAAGTTATGCAACAAGAAGATGCTGAAAAACTGCAAGAGAAGATCATGAGTGCAAAGTTTGACTTTAACGATTTTCTAAAGCAAACTCGTGCTGTTGCACAAATGGGTTCTGTGTCTCGTGTTATGGGAATGATTCCTGGTATGTCGAAGGTTACTCCTGCTCAAATTCGAGAAGCAGAGAAGAATTTGAAGAATATGGAAGCAATGATAGAAGCCATGACCCCAGAGGAGAGGGAAAAACCAGAACTGTTGGCTGAATCCCCTGTCAGGAGGAAACGAGTTGCTCAGGAATCAGGGAAAACAGAGCAGCAGGTAAGCCAAGTTGTAGCTCAACTATTCCAAATGCGTGTTCGAATGAAGAATCTGATGGGTGTAATGCAAGGTGGATCAATGCCAACACTTAGTAATCTTGAAGAAGCACTTAAACCAGAGGAAAAGGCTCCACCTGGCACTGCAAGGAGGAGAAAGAGATCAGAACAAAGGAGCCTATTTGCGGACTCAGCAGCAAGGCCAACTCCTCGTGGTTTTGGGAGCAAATAA 1695 0.4525 MEAVLASRHFSTPTHSSSHNRTVCSSSPSPNSLKLSSPWTNASISSRNSFTKEIWGWVQAKSVAVRRRRDMPGVVRAEMFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKLSNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAKKKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTPAQIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVVAQLFQMRVRMKNLMGVMQGGSMPTLSNLEEALKPEEKAPPGTARRRKRSEQRSLFADSAARPTPRGFGSK* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0696 564 MobiDBLite consensus disorder prediction 461 491 - -
Lja1g0696 564 TIGRFAM ffh: signal recognition particle protein 81 505 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lja1g0696 564 PANTHER BNAC02G02820D PROTEIN 53 546 - -
Lja1g0696 564 Pfam Signal peptide binding domain 404 502 IPR004125 GO:0006614|GO:0008312|GO:0048500
Lja1g0696 564 Pfam SRP54-type protein, helical bundle domain 83 160 IPR013822 GO:0005525|GO:0006614
Lja1g0696 564 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 346 359 IPR000897 GO:0005525|GO:0006614
Lja1g0696 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 431 IPR027417 -
Lja1g0696 564 Pfam SRP54-type protein, GTPase domain 179 373 IPR000897 GO:0005525|GO:0006614
Lja1g0696 564 Gene3D - 168 362 IPR027417 -
Lja1g0696 564 SMART SRP54_N_2 79 164 IPR013822 GO:0005525|GO:0006614
Lja1g0696 564 Coils Coil 441 461 - -
Lja1g0696 564 SUPERFAMILY Signal peptide-binding domain 404 505 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lja1g0696 564 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 53 546 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lja1g0696 564 CDD SRP_G 179 371 - -
Lja1g0696 564 MobiDBLite consensus disorder prediction 9 39 - -
Lja1g0696 564 MobiDBLite consensus disorder prediction 461 483 - -
Lja1g0696 564 Gene3D - 384 508 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lja1g0696 564 Gene3D - 82 383 IPR042101 -
Lja1g0696 564 Hamap Signal recognition particle 54 kDa protein [srp54]. 83 520 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lja1g0696 564 SMART AAA_5 177 324 IPR003593 -
Lja1g0696 564 MobiDBLite consensus disorder prediction 524 548 - -
Lja1g0696 564 MobiDBLite consensus disorder prediction 1 39 - -
Lja1g0696 564 SMART SRP54_3 178 373 IPR000897 GO:0005525|GO:0006614
Lja1g0696 564 MobiDBLite consensus disorder prediction 517 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0696 Lja-Chr1 6719523 6725347 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0696 K03106 - gmx:100782581 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0696 1 6719523 6725347 Lja1g0696 1 6719523 6725347 ECH