Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0688 ATGGTTCTCTCAAAGTCCCTTACCATCTTTGTGGTGGTGGCTTTCTCCATTAGTGTGTCACTAATCAACAATGGCGTTGAAGCGTTTCATAAAATCTACCCGCATCTTCAATCTGTTTCAGCGGTTTCTGTGAGCGGAATGCATAGAACTGGATACCATTTTCAACCTCCTAGGAACTGGATCAACGATCCAAATGGACCCATGTTCTACAATGGAGTGTACCACCTGTTCTACCAGTACAATCCCAATGGCTCTGTGTGGGGCAACATCGTATGGGCTCACTCAATTTCAAAGGACCTCATCAATTGGAAAGCACTTGAACCTGCCATTTACCCATCCAAACCATTTGACAAGTACGGGTGCTGGTCTGGGTCAGCCACAATCCTCCCGGGTAAGGGACCCGTGATTCTCTATACGGGAATCATTGATGAGAACCAAACTCAAGTGCAATGTTACGCCAAACCAGAAGACCCATCAGACCCGTTCCTCAGAAAATGGGTGAAACCTGATGAGTTTAACCCGATTGTGGTGGCTGGGAAAGGAGTCAATGGCAGTGCGTTTCGCGACCCAACAACCGCGTGGTGGAGCAAGGATGGGCATTGGAGGATATTGGTTGGTAGTAGAAGAAAGCATAGAGGGATGGCCTATTTGTATAGGAGCAGAGATTTTTTCAAGTGGGTTCGAGCTAAACACCCGATCCATTCAGCGAAAACAGGTATGTGGGAGTGCCCGGATTTTTACCCGGTTTCTTTGAAAGGGAAAGAAGGATTGGACACTTCAATGGTGGGGACTAATGTTAAACATGTGTTGAAGAATAGTCTTGACATGACTAGGTTCGAGTACTACACGTTGGGAACTTATTTTATGAATAAGGATAAGTATATTCCTGATAATACTTCAGAGGATGGTTGGGGTGGCCTTAGATATGACTATGGTAATTTCTATGCTTCTAAGTCATTTTTTGACCCTAGCAAAAACCGTAGGATCTTGTGGGGTTGGGCGAACGAATCTGATTCCAAGGATGATGATATTAAAAAGGGTTGGGCAGGAATTCAGGCAATTCCAAGATCGGTGTGGCTTGATTCTACTGGTAGACAATTGGTTCAATGGCCCGTTGAAGAGTTGAATAGTCTTAGAGAGAGAGAAGTTAATATGAACAATCACAAGCTTGAAAAGGGAGATCATATTGAAGTAGATGGAATAACTGCAGCCCAGGCAGATGTGGAAGTTACCTTCTCGTTTACAAGTTTGGATAAGGCAGAGGCATATGATCCAAGTTGGGTAAACGCACAAGATCTTTGTGCCCAAAAGGGTTCGAAAGTTGAAGGTGGGGTTGGGCCATTTGGGCTTCTGACTTTGGCTTCAGAAAATTTAGAGGAGTTCACTCCCGTGTTCTTCAGAATTTTCAAAGCTCCAGATAAGCATGTGGTTCTCTTGTGCTCAGACGCAAGGAGTTCCTCTTTGAAGAGTAACTTGTACAAGCCACCATTTGCTGGATTTGTGGATGTGGATTTGGAAGCAACTAAGAAACTTTCACTCAGGAGTTTGATTGATCACTCAGTGGTGGAGAGTTTTGGAGAAGGAGGGAAAACAAACATTTTGTCCAGGGTTTATCCACAACTTGCAGTAACGATTCAAGCTCATTTGTTCGTGTTCAACAATGGTACCGAACCAATCACTGTGGAGAAGCTCAAAGCATGGAGCATGAAATCTGCTGATATAATTTGA 1728 0.441 MVLSKSLTIFVVVAFSISVSLINNGVEAFHKIYPHLQSVSAVSVSGMHRTGYHFQPPRNWINDPNGPMFYNGVYHLFYQYNPNGSVWGNIVWAHSISKDLINWKALEPAIYPSKPFDKYGCWSGSATILPGKGPVILYTGIIDENQTQVQCYAKPEDPSDPFLRKWVKPDEFNPIVVAGKGVNGSAFRDPTTAWWSKDGHWRILVGSRRKHRGMAYLYRSRDFFKWVRAKHPIHSAKTGMWECPDFYPVSLKGKEGLDTSMVGTNVKHVLKNSLDMTRFEYYTLGTYFMNKDKYIPDNTSEDGWGGLRYDYGNFYASKSFFDPSKNRRILWGWANESDSKDDDIKKGWAGIQAIPRSVWLDSTGRQLVQWPVEELNSLREREVNMNNHKLEKGDHIEVDGITAAQADVEVTFSFTSLDKAEAYDPSWVNAQDLCAQKGSKVEGGVGPFGLLTLASENLEEFTPVFFRIFKAPDKHVVLLCSDARSSSLKSNLYKPPFAGFVDVDLEATKKLSLRSLIDHSVVESFGEGGKTNILSRVYPQLAVTIQAHLFVFNNGTEPITVEKLKAWSMKSADII* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0688 575 SUPERFAMILY Arabinanase/levansucrase/invertase 43 372 IPR023296 -
Lja1g0688 575 Pfam Glycosyl hydrolases family 32 C terminal 374 568 IPR013189 -
Lja1g0688 575 Pfam Glycosyl hydrolases family 32 N-terminal domain 53 371 IPR013148 -
Lja1g0688 575 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 9 574 - -
Lja1g0688 575 CDD GH32_Fruct1-like 59 360 - -
Lja1g0688 575 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE PROTEIN 9 574 - -
Lja1g0688 575 Gene3D - 385 569 - -
Lja1g0688 575 SUPERFAMILY Concanavalin A-like lectins/glucanases 371 572 IPR013320 -
Lja1g0688 575 SMART glyco_32 53 529 IPR001362 GO:0004553|GO:0005975
Lja1g0688 575 Gene3D Glycosyl hydrolase domain; family 43 57 384 IPR023296 -
Lja1g0688 575 ProSitePatterns Glycosyl hydrolases family 32 active site. 53 66 IPR018053 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0688 Lja-Chr1 6595239 6602046 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0688 25 569 Glycoside Hydrolase AT2G36190 65.771 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0688 K01193 - gmx:100799008 1001.12