Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0676 ATGCAGATGGAATCCATGGAAGCAACCTTCAGCATGCAAAGCCAAACAGAGAAAAGCCAAGAAGGCATCCACACTTATGCAGCTCAGTGGCCAATTTTCTCCATAGCATGGTCACTCCGCCGCGATAAAACCCCGCGACTCGCCATCGGAAGCTACTTAGAAGACTACGCCAACAAGGTAGAACTAATCCACTTCAACCACGACGATACAACATCCAATTTCACCACCGACCCTCGTCTGATTCTCGACCACCCTTACGCACCAACAAACACAATGTTCTTCCCCTCCGAAGACACCACAAATCCAGACCTCATCGCCACATCAGGAGACATCATAAGACTATGGGAAATCCAAGAAGACAAGATTCAACTAAAGTCCTCGTTAATCGGCAACAAAGTGAGTGACCACTCTGCCATAACATCATTCGATTGGGCTGAATTTGACACCAATCTCATTGCTTCTTCTAGCGTGGACACAACTTGCACCATCTGGGATATTGAAAGGGAAGTCATGAATGCACAGTTGGTTGCTCATGATAAAGAAGTGTATGATATCTCATGGGGTGGATTCAATGTGTTTGCTTCTGTCTCCGGCGATGGTTCTGTCAGAGTTTTTGATTTACGGGACAAGGAAAAATCTACTATAATCTATGAGAATCCAGTCCAGGATTGTCCTCTGCTTCGACTGGAATGGAATAAAAGCGATGCAAGGTTTATGGCTACCGTGGGGATAAACAGCAACAAGGTGGTAATCTTGGATATTAGGCTACCAACCACGCCATTGATGGAGCTAAGCAAACATAGGACGTGTGTTAATGCAGTGTCGTGGTCCCCAGGTTATGGTCGGAATCTGTGTTCTGTCAGTGATGATGCTACGGCTCTGATATGGGAGGTGGTGGACCCCCCGGGGTACGGATCAACGGTGATCGGTGGTGAGGTGGTGGAGCCCGCGATGTGGTATGGGTCGCCGGCGGAAATCAATCACGTGCGTTGGTCCCCGGTGGGGATGGACTGGATTGCTCTTGCTTTCTTGAACAACTTGCAGCTGCTCAAGGTGTGA 1059 0.4835 MQMESMEATFSMQSQTEKSQEGIHTYAAQWPIFSIAWSLRRDKTPRLAIGSYLEDYANKVELIHFNHDDTTSNFTTDPRLILDHPYAPTNTMFFPSEDTTNPDLIATSGDIIRLWEIQEDKIQLKSSLIGNKVSDHSAITSFDWAEFDTNLIASSSVDTTCTIWDIEREVMNAQLVAHDKEVYDISWGGFNVFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATVGINSNKVVILDIRLPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEVVDPPGYGSTVIGGEVVEPAMWYGSPAEINHVRWSPVGMDWIALAFLNNLQLLKV* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0676 352 PANTHER WD REPEAT CONTAINING PROTEIN 12 352 IPR045159 -
Lja1g0676 352 Pfam WD domain, G-beta repeat 175 206 IPR001680 GO:0005515
Lja1g0676 352 Pfam WD domain, G-beta repeat 134 165 IPR001680 GO:0005515
Lja1g0676 352 PANTHER WD REPEAT-CONTAINING PROTEIN LWD1-LIKE 12 352 - -
Lja1g0676 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 215 IPR001680 GO:0005515
Lja1g0676 352 Gene3D - 13 347 IPR015943 GO:0005515
Lja1g0676 352 SMART WD40_4 257 297 IPR001680 GO:0005515
Lja1g0676 352 SMART WD40_4 168 206 IPR001680 GO:0005515
Lja1g0676 352 SMART WD40_4 121 165 IPR001680 GO:0005515
Lja1g0676 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 298 IPR001680 GO:0005515
Lja1g0676 352 SUPERFAMILY WD40 repeat-like 23 336 IPR036322 GO:0005515
Lja1g0676 352 ProSitePatterns Trp-Asp (WD) repeats signature. 284 298 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0676 Lja-Chr1 6328134 6329764 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0676 K11805 - zju:107416321 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0676 1 6328134 6329764 Lja1g0676 1 6328134 6329764 ECH