Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0668 ATGAGACTCATCATTTGGTTAGCATCAGCAAATTCAATATCAATGGTCTCTCACTTCAAAATCACACTGCTTTTATTATTGTCTGTGCTGGGATTCACCTTTACTTTTGCTCATATCACACCAACATTTCCTTCTTCAGCACTTTCTCCAGAGCTGCGTCTGAACCTGGACTCTGCTTCTTCTGCCAAAAATGGCCTTTACAGAACCAAGTTCTTCACCCAGATACTTGACCACTTCGATTTTACCCCCAGGAGCTATCAAACGTTTCAACAAAGGTATCTCATCAATGATACCCATTGGGGTGGTGCCAAGAAGAAAGCTCCAATCTTTGTTTACACAGGAAATGAAGGGAACATAGAGTGGTTCACTCAGAACACAGGGTTTATGTTTGAGATTGCACCCCATTTCAATGCCCTTTTGGTTTTTATTGAGCATAGATTCTATGGAAAATCAATTCCATTTGGAGGAAACAAGAAGGTTGCATATGCAAATAGCAGCACACTTGGATATTTGAGTTCCACTCAGGCATTAGCTGATTATGCCACACTCATCATTGATCTGAAGAAGAATCTGTCAGCTACTGATTCCCCTGTTGTGGTCTTTGGAGGATCCTATGGAGGAATGCTTGCTGCGTGGTTCAGAATGAAGTACCCTCACGTGGCCATTGGAGCTTTAGCATCCTCTGCTCCAATCCTCAATTTTATGGATTTGGTTTCACCATATGCTTTCTTTAACATCGCCACTCAAGACTTCAAGAGTGAGAGTGAGAATTGTTACAAAGTGTTGAAAGGGTCTTGGAAACTGATAGAAGACACGGCAAGCAAACACGGTGGAAAGGAAACACTACGGAAAACATTTAGATTATGCAATGATGTGAGCGCAGGTAATTTGGAAGGTTGGTTCCAGACAGCGTTGATTTATACGGCCATGACAGATTATCCAACACCATCCAATTTCCTCAATCCCTTGCCAGCATATCCAGTCAGAAAGATGTGCGAGGCGATTGACAGCAAGTCAGTGAGAGAAAAGAGCACATTGAACAAGTTGTATGAAGTAGCGAATATCTACTACAACTACACTGGTACTGCTACCTGTTTCAACTTGGATGATGATTCAGATCCTCATGATCTTGGAGGATGGCAATGGCAGGCATGTACAGAGATGATAATGCCATTAGGTGCAAATAATGAGAGTCTGTTCCCCGAATCCGAGTGGTCATTCGAAGATAGATTTACTTACTGCAAATTTCACTACGACGTTAAGCCGAGACCACACTGGATTACAACTGAGTTTGGCGGCCATGATATTGAGAAAGTTTTGAAAAGGTCGACAAGCAACATTATCTTCTATAATGGTTTAAGAGACCCTTGGAGTGGTGGAGGAGTGTTGAAGAATATATCCAAAACTTTAGTTGCTATAGTTGCAAAAGAAGGGGCTCATCATACAGATCTAAGGTACTCAACTAAGGAGGATCCAAAGTGGCTCAAAGATGTAAGGAAAAAAGAGGTCCAAATCATAGCAAGTTGGATCTCACAATACCATCAAGATTGA 1551 0.4172 MRLIIWLASANSISMVSHFKITLLLLLSVLGFTFTFAHITPTFPSSALSPELRLNLDSASSAKNGLYRTKFFTQILDHFDFTPRSYQTFQQRYLINDTHWGGAKKKAPIFVYTGNEGNIEWFTQNTGFMFEIAPHFNALLVFIEHRFYGKSIPFGGNKKVAYANSSTLGYLSSTQALADYATLIIDLKKNLSATDSPVVVFGGSYGGMLAAWFRMKYPHVAIGALASSAPILNFMDLVSPYAFFNIATQDFKSESENCYKVLKGSWKLIEDTASKHGGKETLRKTFRLCNDVSAGNLEGWFQTALIYTAMTDYPTPSNFLNPLPAYPVRKMCEAIDSKSVREKSTLNKLYEVANIYYNYTGTATCFNLDDDSDPHDLGGWQWQACTEMIMPLGANNESLFPESEWSFEDRFTYCKFHYDVKPRPHWITTEFGGHDIEKVLKRSTSNIIFYNGLRDPWSGGGVLKNISKTLVAIVAKEGAHHTDLRYSTKEDPKWLKDVRKKEVQIIASWISQYHQD* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0668 516 Gene3D Serine carboxypeptidase S28, SKS domain 239 404 IPR042269 -
Lja1g0668 516 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 15 516 - -
Lja1g0668 516 Pfam Serine carboxypeptidase S28 74 501 IPR008758 GO:0006508|GO:0008236
Lja1g0668 516 PANTHER LYSOSOMAL PRO-X CARBOXYPEPTIDASE-LIKE PROTEIN 15 516 - -
Lja1g0668 516 SUPERFAMILY alpha/beta-Hydrolases 126 483 IPR029058 -
Lja1g0668 516 Gene3D alpha/beta hydrolase 71 510 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0668 Lja-Chr1 6243956 6248646 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0668 K01285 - gmx:100781698 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0668 1 6243956 6248646 Lja1g0668 1 6243956 6248646 ECH