Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0665 ATGACAAAGCTGATTTTGAGCGCGCTTGAAGGTAAAGTAGCAATAATCACAGGCGGTGCAAGCGGCATTGGTGCCGCCACTGCCAAACTCTTTGTTCAACACGGTGCTAAAGTCGTCATTGCCGACGTTCAAGACGATTTAGGCCAGTCCCTCTGCAAAACTCTCAGCAAAAACTTCACCAACAACAACATTCTCTACATTCACTGCGACGTAACTCGTGATTCAGACGTGAAAAACGCGGTTGATACCGCAGTATCCAAACATGGCAAGCTTGACATCATGTACAACAATGCTGGTATCTCAGGAGGCTCGAGTTCTTCAATTCTAGCCACTGATGATGAAACCTTCAAAAGAGTTTTTGAAGTTAACGTTTTGGGCGCTTTCTTGGGCGCCAAGCATGCCGCGAGGTTCATGATCCCAGCAAAGAGAGGTGTCATTCTTTTCACTTCGAGCGTTGCTTCGGTGCTTGGCGGCAATGCTTCGCATGCTTACACTACTTCGAAGCATGCAGTTGTGGGGCTTATGAAGAATCTCTGCGTAGAGCTTGGGCAATATGGGATTAGAGTGAATTGCATCGCTCCTGCGGGGATTCCAACTCCGTTGATGAACAATGCGCTGGAGATGAAGGAGAAGGACACACGGGAAGTGCTGCGGGCAGTTTCGGTGTTGAAAGAGGTTGTTCTTGAGGCTGAGGATGTTGCTGAGGCGGCGGTTTATTTGAGCAGTGATGAGTCTAAGTGTGAGAGTGGTGTGAACTTTGTTTTGGACGGGGGTTATAGCACCACCAATATGGCATTCCTTTCTGCACTGAATGGTATGAAGATGAATAGTAGACACACCAACAACAACCATGTTAGTAATGGCTTTTCTGCACTTGATGACTAG 885 0.4746 MTKLILSALEGKVAIITGGASGIGAATAKLFVQHGAKVVIADVQDDLGQSLCKTLSKNFTNNNILYIHCDVTRDSDVKNAVDTAVSKHGKLDIMYNNAGISGGSSSSILATDDETFKRVFEVNVLGAFLGAKHAARFMIPAKRGVILFTSSVASVLGGNASHAYTTSKHAVVGLMKNLCVELGQYGIRVNCIAPAGIPTPLMNNALEMKEKDTREVLRAVSVLKEVVLEAEDVAEAAVYLSSDESKCESGVNFVLDGGYSTTNMAFLSALNGMKMNSRHTNNNHVSNGFSALDD* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0665 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 261 IPR036291 -
Lja1g0665 294 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 151 179 IPR020904 GO:0016491
Lja1g0665 294 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-RELATED 7 269 - -
Lja1g0665 294 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Lja1g0665 294 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Lja1g0665 294 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Lja1g0665 294 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Lja1g0665 294 PRINTS Glucose/ribitol dehydrogenase family signature 13 30 IPR002347 -
Lja1g0665 294 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Lja1g0665 294 Gene3D - 5 274 - -
Lja1g0665 294 Pfam Enoyl-(Acyl carrier protein) reductase 18 260 - -
Lja1g0665 294 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 7 269 - -
Lja1g0665 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Lja1g0665 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Lja1g0665 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0665 Lja-Chr1 6218123 6224481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0665 9 270 Acyl Lipid Metabolism Gene Families AT3G55290 30.515 7.17e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0665 - - aprc:113863381 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0665 1 6218123 6224481 Lja1g0665 1 6218123 6224481 ECH