Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0662 ATGCCATCTATTTCTTCCCCATCAGAATCTGTACCCACTCACAAACCAGCCATGCCCCAATCCAATGGATCGATCCTCACCAGATCAGTGTGGTCCTCCAACCTCGAATCCGAATTCCAATTGATCCGATCCTTGATTGATGCTTACCCTCTCATCTCCATGGACACCGAGTTCCCCGGCGTCATCGTCCGCCCCGACACCGCCGACCCCTCCTTCCACCACCGCCATCCGCCGGCTGCTGCTCTCTACACCGCCCTCAAAGCAAACGTCGACCGCTTGAATCTCATTCAGATTGGGCTAACTCTCTCCGACCACAAGGGCAAACTTCCCACACTAGGAACCCCCAATTCCTACATCTGGGAGTTCAATTTCCGGGACTTTGATGTCGCGCGCGATGACCACGCCCCCGACTCAGTCGAGTTGCTGCGGCGTCAGGGTATTGACTTCGAGAGGAACCGCGAGTTCGGGATCGACTCATTTCGTTTTGCTGAGTTGATGATGTCTTCGGGGCTTGTTTGCGATGATGCAGTGAGCTGGGTTACTTTTCACAGTGCTTATGATTTTGGGTACCTTGTGAAGTTGCTGACGCAGCGTGCTTTGCCGGAGGAGTTGATGGAGTTTCTTCGGCTCGTGAGGGTGTTCTTTGGTGACAGGGTTTTTGATGTGAAGCATCTCATGAGGTTCTGCTCCAACCTGCACGGTGGGCTTGACCGGGTTTGCCATTCGCTCAAGGTGGAACGTGTGATAGGGAAAAGTCACCAGGCTGGTTCAGATAGTTTGCTTACTTTGCATGCTTTTCAGAATATCAGGGAAGTTTACTTTGGCAAAGCAGATGGGCTAGTCAAGTATGCTGGTGTCTTGTATGGTTTAGAGGTTTTCTGA 882 0.5204 MPSISSPSESVPTHKPAMPQSNGSILTRSVWSSNLESEFQLIRSLIDAYPLISMDTEFPGVIVRPDTADPSFHHRHPPAAALYTALKANVDRLNLIQIGLTLSDHKGKLPTLGTPNSYIWEFNFRDFDVARDDHAPDSVELLRRQGIDFERNREFGIDSFRFAELMMSSGLVCDDAVSWVTFHSAYDFGYLVKLLTQRALPEELMEFLRLVRVFFGDRVFDVKHLMRFCSNLHGGLDRVCHSLKVERVIGKSHQAGSDSLLTLHAFQNIREVYFGKADGLVKYAGVLYGLEVF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0662 293 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 16 292 IPR039637 GO:0004535|GO:0030014
Lja1g0662 293 Pfam CAF1 family ribonuclease 30 157 IPR006941 -
Lja1g0662 293 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 16 292 - -
Lja1g0662 293 MobiDBLite consensus disorder prediction 1 23 - -
Lja1g0662 293 Gene3D - 14 292 IPR036397 GO:0003676
Lja1g0662 293 SUPERFAMILY Ribonuclease H-like 19 291 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0662 Lja-Chr1 6163484 6164930 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0662 K12581 - gmx:100805583 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0662 1 6163484 6164930 Lja1g0662 1 6163484 6164930 ECH