Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0653 ATGGCTCGTCCTTACATTCTCTTCATCCTCTTCACTCTCTCATTCACAATCACAACAACATTCTCTTCTTCTCCAAACCCCAAAACAATCACTCTCCCACTCTCCCCTGTTTTCACCATATCCCAAGATCACCTCCACACTCTCAAACTCACCGCTTCAGCTTCCCTAACCAGAGCCCACCACCTCAAACACCGCCACACCCCTCCCCTCAACACCTCCGTTTCCCCCAAAAGCTACGGTGGCTACTCCATAGATCTCAACTTCGGAACACCGCCACAAACCTCCTCCTTCGTCTTAGACACCGGAAGCAGCCTCGTCTGGCTCCCTTGCTCCTCCCGCTACCTCTGCTCCGGCTGCAACTTCCCCAACATCGGCAAAATCCCCACCTTCATCCCCAGAAACTCTTCCTCCGCCAAGCTCCTCGGCTGCGGTAACCCCAAATGCGGTTACCTTTTCGGCCCCGACGCTCAATCCCGCTGCCGCGGCTGCAATCCTGAATCTCAGAATTGCAGCAACGTGACATGCCCTGCTTATATAGTCCAATACGGTTTGGGCTCAACCTCGGGTTTTCTTCTCCTGGAAAACCTCGATTTTCCAGGAGAGAAAACCGTTACTGATTTTGTGGTCGGATGCTCGATCCTCTCCATCCGGCAACCTTCCGGGATTGCCGGATTCGGACGCGGGATCGAGTCGCTTCCGACCCAATTAGGCCTCAAGAAATTCTCCCATTGTTTACTATCTCACCGATTCGACGACGAACCGGAGAGCAGCGATCTAGTTCTGCAGATTGACTCCACCGGCGACACCAAGACGCCTAACGTCAGCTACACTCCGTTCGGGAAGAATCCAACCGGGAACAACACCGCATTCCTCGAATACTACTACGTGGGGCTGAAGAAAATCCTCATCGGCGGCGAGAGGGTGAAGATTCCGTTGAATTTGCTGGTGCCGGAATCCTCCGGCGTAGGCAACGGAGGCACAATTGTGGATTCCGGCACCACCTTCACCTTCATGGAGAGGCCAATCTTCGATTTGGTGGCAAAGGTTTTCGAGAAGCAGCTTTCAAATTTCTCCAGAGCGAAGGAGGTTGAGGCACAATCGGGGTTGGGTCTCTGTTTCGATTTCTCCGGCACGGAAACGGTGCCGATCCCGGAGTTGATGTTTCAGTTCAAAGGCGGCGCTAGAATGATGCTGCCTCTCTCGAATTATTTCTCCCTGGTCGACGATTCTGAGGTCGCGTGCCTGACCATTATCTCCGATGAAAGCTCCGGCACGGCGAGGGCTGGTGGTCCGGCGATTATCTTGGGGAATTACCAGCAACAGAATTTCTACGTTGAGTATGATTTGGAAAATGATCGGTTCGGTTTTCGGCAGCAGAATTGTCAAAAGAGTGCTTAG 1398 0.53 MARPYILFILFTLSFTITTTFSSSPNPKTITLPLSPVFTISQDHLHTLKLTASASLTRAHHLKHRHTPPLNTSVSPKSYGGYSIDLNFGTPPQTSSFVLDTGSSLVWLPCSSRYLCSGCNFPNIGKIPTFIPRNSSSAKLLGCGNPKCGYLFGPDAQSRCRGCNPESQNCSNVTCPAYIVQYGLGSTSGFLLLENLDFPGEKTVTDFVVGCSILSIRQPSGIAGFGRGIESLPTQLGLKKFSHCLLSHRFDDEPESSDLVLQIDSTGDTKTPNVSYTPFGKNPTGNNTAFLEYYYVGLKKILIGGERVKIPLNLLVPESSGVGNGGTIVDSGTTFTFMERPIFDLVAKVFEKQLSNFSRAKEVEAQSGLGLCFDFSGTETVPIPELMFQFKGGARMMLPLSNYFSLVDDSEVACLTIISDESSGTARAGGPAIILGNYQQQNFYVEYDLENDRFGFRQQNCQKSA* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0653 465 ProSiteProfiles Peptidase family A1 domain profile. 82 457 IPR033121 -
Lja1g0653 465 SUPERFAMILY Acid proteases 77 461 IPR021109 -
Lja1g0653 465 CDD pepsin_A_like_plant 81 461 IPR034161 -
Lja1g0653 465 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 97 108 IPR001969 GO:0004190|GO:0006508
Lja1g0653 465 PANTHER BNACNNG47670D PROTEIN 7 461 - -
Lja1g0653 465 PRINTS Pepsin (A1) aspartic protease family signature 433 448 IPR001461 GO:0004190|GO:0006508
Lja1g0653 465 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190|GO:0006508
Lja1g0653 465 PRINTS Pepsin (A1) aspartic protease family signature 327 338 IPR001461 GO:0004190|GO:0006508
Lja1g0653 465 Gene3D Acid Proteases 267 463 IPR021109 -
Lja1g0653 465 PANTHER OS07G0603500 PROTEIN-RELATED 7 461 - -
Lja1g0653 465 Pfam Xylanase inhibitor N-terminal 82 249 IPR032861 -
Lja1g0653 465 Gene3D Acid Proteases 69 254 IPR021109 -
Lja1g0653 465 Pfam Xylanase inhibitor C-terminal 294 457 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0653 Lja-Chr1 6086017 6087825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0653 69 463 Miscellaneous Gene Families AT1G44130 24.408 2.28e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0653 - - gmx:100805927 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0653 1 6086017 6087825 Lja1g0653 1 6086017 6087825 ECH