Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0621 ATGACCCGATTATCCGAAAAGCTCCGTTTATCTTCCTTGCTCCTGAAACCGACCCGTTTTCTCGCTCTAGTTTCTCTCTCTACTCTCTTCCGTCTCTGCAAGTCCCTCGCTCGCTTCCTACTCTCCCAAACCCTACCTTTCTTCTCCATGGACAGCCTCTTCTCCAGTAACTCCGACTACTTCTCCGACGACTTCGATTCCTCCTACTCCCACCGTCGCTTCTTCCGTGACGATGACCGTGATTCCGTCGCCGACGAGAGGGTCTACCTACTCCCCTACAAGTGGTGGGAGGAAGTTGAAGGTGAAGCTGATGATGGTGGAGGAGGTGTTCTGTACACGGTGTCGTCTAGTGCTGATTCTGACTCTGAGATTTTGCTCGAACTGACTCTCGAAGAGAGCGGCGAAGAGAGCCACGAGAAGATTAAGAATCTGGAGGTAGAGTTTTCCGGCCGTCAGTATGCATTGGTCCCGGAAGGAATGTGGTTGCGTGCTCTCAAACGGTATAATGATTTTAATAATGCAGTAAATTCAGAAGAGGACTGTTTGCTGGATTTGTTCCCCTTGCAAGTTAGGATATCGGTTTCAGGGGAAACCAGTTCACTGGTAGCAACGATAAGCCAAAAGGAAAACATGGTTGAATTCTACAAGAAAGCTTGTGGCATTTTCAATCCCGCGTATAACCCAGTGCATATTTGGGACTTTTCAGGGCAGACGACCCAGTTATTTATGAATGACAAAGTTAGGTTGCCAAATGATTCTCACGGTCAACCTGGAAAAGAGGTTCTTCTGGAGTTACAAGTTCATGGATTTTCAGATTCAGTGATGGGTAATGGGAGAGATGAGATGATTTCAGATAGGTCTCAGATGGAATGTTCTTCTAGCAGTAGCTCTGTTGTGATGAATGGAAGCACTGGCAAAGTGATTCCTTATGTAGCAACATCCAACTATTCTCAAGGCTGTAGCTATAGAGCAGTTCGAACTTTGGGCTTGACAGGGCTACAAAATCTTGGAAATACCTGTTTTATGAATAGTGCCATTCAGTGTCTGGCTCATACCCCTAAGCTTGTTGATTTTTTCCTCGGAGATTACCGTAAAGAGATAAATTATGAAAATCCCCTGGGAATGAATGGAGAACTTGCTCTAGCTTTTGGAGATCTGCTTAGAAAGCTGTGGGTTCCTGGACAAAGGCCTGTTGCACCACGAATATTTAAGATGAAACTGGCTAATTTTGCCCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTTGCCTTTTTGTTGGATGGACTGCATGAAGACCTTAATCGTGTAAAACGGAAGCCATATCATGAAGTTAAGGATGCAGATGGCCGTCCAGATGAAGAAGTTGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAACGATTCCATTATAGTTGATTTGTGCCAAGGTCAATTCCGCTCAACACTGGTTTGCCCTACTTGCAAGAAGGTTTCTATCACATTTGACCCATTTATGTATCTATCCCTGCCTTTACCTTCTACAACGATGCGGACCATGACTGTAACTGTCATGAGCACTGATGGGATTCAACTGCCTTCTAGAATTACTGTAACGGTGCCTGAATATGGTACAATAGAAGATCTTGTTGGAGCCGTAAGTGCTTCTTGTTCTCCGAGAGATGATGAAATCCTCTTGTTGGCTGAGGTATACAAGAATAAGATTTTTCGAATATTTGATCCGCCATCTGAAAAATTAACCGAAATCAGAGATCAAGACAAACTTGTTGCTTACCGATTGAAGAAGTATAATGACGCTAGTACCTTGGTTATTTTCATGCATGCGAAACGTTTGGTGGAAGATTATGTGAATGGGAGGTTTGAAAATGTACTGGTTGGTATTCCAGTTGTGACAAGGTTGTCCAGTATTTCTTATGGACATGATGTTCATAGGGAGTTTCTGAAGTTAATCAATCCATTTATGATGCAAAACACTGAAGATATGACAGATGAGTACGACCAGGATGATGATGTTATTGAAAAAGTACATACTGATGATGAATTGGGTGATCCTACTGGCTCTGCAGCATTAGGAAGTGATGTAGTCTCAAGCAGTGGAGCAGAAGATGATTTGATACATTCAAGTACTGACTTCGAATTCTACTTTGCTTCTGAGTCAGGAATAGAAGATAAGATGACACTGAGCGATCCATTACCAGACACATTGTCCCCCAAAGGGCTTGTGGTAGTTGTTTTCTGGTCGGATGATATGCTTAAAAAGTATGATAAAAATCTGCTGGGCTCATTGCCTGATGTGTTCAAGCCCCAGCTATTCACCAAGAGAACACAGGAATCAATTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAAAGAGGAACCTCTTGGACCAGAAGATATGTGGTACTGTCCTTCCTGCAAGAAACCTCAGCAAGCAACTAAAAAGTTAGACCTTTGGAGATTGCCTGAAATCGTTGTTATTCATTTGAAGAGATTCTCATACAGCCGATACTTCAAGAACAAGCTGGATACATTTGTTGACTTCCCAGTTAATGATCTGGACTTCTCAGCTTATGTTGCTCACATGAATTATCAGTCTTCCAATCGCTATGTGTTGTATGCAATTAGTTGTCACTATGGAGGGTTGGGAGGTGGTCATTATACAGCATTTGTCCGTTATGGCCATGAGAAATGGTACGAGTTTGATGACACCAGGGTTGCCCCTGCTAATGAGGACGAGATTAAGACTTCTGCTGCTTATGTTCTTTTTTACAGGAAAGTTTAG 2793 0.4307 MTRLSEKLRLSSLLLKPTRFLALVSLSTLFRLCKSLARFLLSQTLPFFSMDSLFSSNSDYFSDDFDSSYSHRRFFRDDDRDSVADERVYLLPYKWWEEVEGEADDGGGGVLYTVSSSADSDSEILLELTLEESGEESHEKIKNLEVEFSGRQYALVPEGMWLRALKRYNDFNNAVNSEEDCLLDLFPLQVRISVSGETSSLVATISQKENMVEFYKKACGIFNPAYNPVHIWDFSGQTTQLFMNDKVRLPNDSHGQPGKEVLLELQVHGFSDSVMGNGRDEMISDRSQMECSSSSSSVVMNGSTGKVIPYVATSNYSQGCSYRAVRTLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRKLWVPGQRPVAPRIFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIIVDLCQGQFRSTLVCPTCKKVSITFDPFMYLSLPLPSTTMRTMTVTVMSTDGIQLPSRITVTVPEYGTIEDLVGAVSASCSPRDDEILLLAEVYKNKIFRIFDPPSEKLTEIRDQDKLVAYRLKKYNDASTLVIFMHAKRLVEDYVNGRFENVLVGIPVVTRLSSISYGHDVHREFLKLINPFMMQNTEDMTDEYDQDDDVIEKVHTDDELGDPTGSAALGSDVVSSSGAEDDLIHSSTDFEFYFASESGIEDKMTLSDPLPDTLSPKGLVVVVFWSDDMLKKYDKNLLGSLPDVFKPQLFTKRTQESISIYKCLEAFLKEEPLGPEDMWYCPSCKKPQQATKKLDLWRLPEIVVIHLKRFSYSRYFKNKLDTFVDFPVNDLDFSAYVAHMNYQSSNRYVLYAISCHYGGLGGGHYTAFVRYGHEKWYEFDDTRVAPANEDEIKTSAAYVLFYRKV* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0621 930 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 55 930 - -
Lja1g0621 930 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 55 930 - -
Lja1g0621 930 SUPERFAMILY Cysteine proteinases 329 929 IPR038765 -
Lja1g0621 930 Gene3D Cysteine proteinases 318 534 - -
Lja1g0621 930 CDD Peptidase_C19R 783 928 - -
Lja1g0621 930 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 332 347 IPR018200 GO:0004843|GO:0006511
Lja1g0621 930 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 873 890 IPR018200 GO:0004843|GO:0006511
Lja1g0621 930 Gene3D Cysteine proteinases 727 930 - -
Lja1g0621 930 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 331 930 IPR028889 -
Lja1g0621 930 Pfam Ubiquitin carboxyl-terminal hydrolase 331 927 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0621 Lja-Chr1 5701773 5708804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0621 784 930 Miscellaneous Gene Families AT4G31670 31.333 4.55e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0621 - K21343 lja:Lj1g3v4752880.2 1427.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0621 1 5701773 5708804 Lja1g0621 1 5701773 5708804 ECH