Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0614 ATGAGCACCATGGATTCCTCTTCCATCTATGGTGTCTCCGTCTCCACCTTCTTCTTCTTCTTCTTCTCCTTCCTTCTCATTTCCACATTCCCCCATTCTTCATCCTCCACCACCACCACCACTCAGATCAACTCCAACTCCATCCTCGTCGCTCTTCTCGATTCCCACTACACCGAACTCGCCGAGCTCGTCGAGAAAGCCCTTCTCCTCCACAACCTCGAACAAGCCGTCGGAACCCACAACATCACCATCTTCGCCCCCAGAAACCAAGCTCTGGAGCGCGACCTCGACCCTGAGTTCAAGCGCTTCCTCCTCGAACCCCGGAATCTCCGCTCACTCCAAACCCTCTTGATGTCCCACATTCTCCCCGCCAGAATCTCCGACCATAACTTCCCCGCCACCGACCGCCGCCACCGAACGCTATCCCCCGACCACCACCTCAATCTCGCCACCAACCCCACCTCCGGCAAGAAAACAGTCGACTCCGCCGAGATCCTCCGCCCAAACGATGTTCTCCGCCCTGACGGCGTCATCCACGGGATCGACAGCCTCATCGTGCCACGTTCCGTGCAGGAGGATTTCAACCGGAGGAGAAGCCTCCGCGCGATCTCTGCGGTGCTCCCGGAGGGAGCGCCGCAGGTCGATCCCCGGACCAACCGCTTGAAGAAACCAGCCCCCGTCCCAGCCGGCGCGCCTCCGGTACTCCCGATCTACGACGCGCTTGCTCCAGGACCGTCACTCGCTCCGGCGCCGGCGCCAGGACCTGGAGGACCACGCCACCACTTCAACGGCGAGAAACAGGTGAAGGATTTCATCCAAACGCTCGTGCATTACGGCGGTTACAACGAAATGGCGGATATTCTGGTGAATCTGACCTCCCTCGCCACCGAGATGGGGAGGTTGGTTTCTGAAGGCTACGTTCTCACCGTTTTGGCTCCCAATGACGAGGCGATGGCGAAGCTGACGACGGACCAGCTGAGCGAACCGGGTGCGCCGGAGCAGATCATCTACTACCACATCATTCCCGAGTATCAGACGGAGGAGAGTATGTACAATGCGGTGAGGAGGTTCGGGAAGGTCCGGTACGACACGCTCCGGTTGCCGCATAAAGTGGTGGCGCAGGAATCTGACGGCTCCGTCAAATTCGGACACGCCGATGTCTCTGCTTATCTTTTCGACCCTGATATTTACACCGACGGGAGAATCTCCGTTCAGGGGATTGACGGCGTTCTTTTACCGCCGGAGGAGAATGACGGTGATACTCCACGCACACGCACACGCACAACAACCCCACTTGTTAAAGTTGCTGCTAAACCCAGAAGAGGTAAGTTGCTGGAACTGGCCTGTAACATGGTTGGAGCTTTTGGACGAGTCTGCTAA 1380 0.5804 MSTMDSSSIYGVSVSTFFFFFFSFLLISTFPHSSSSTTTTTQINSNSILVALLDSHYTELAELVEKALLLHNLEQAVGTHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPARISDHNFPATDRRHRTLSPDHHLNLATNPTSGKKTVDSAEILRPNDVLRPDGVIHGIDSLIVPRSVQEDFNRRRSLRAISAVLPEGAPQVDPRTNRLKKPAPVPAGAPPVLPIYDALAPGPSLAPAPAPGPGGPRHHFNGEKQVKDFIQTLVHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQESDGSVKFGHADVSAYLFDPDIYTDGRISVQGIDGVLLPPEENDGDTPRTRTRTTTPLVKVAAKPRRGKLLELACNMVGAFGRVC* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0614 459 SUPERFAMILY FAS1 domain 46 188 IPR036378 -
Lja1g0614 459 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 4 457 - -
Lja1g0614 459 Gene3D FAS1 domain 48 187 IPR036378 -
Lja1g0614 459 Pfam Fasciclin domain 293 413 IPR000782 -
Lja1g0614 459 Pfam Fasciclin domain 56 187 IPR000782 -
Lja1g0614 459 Gene3D FAS1 domain 260 414 IPR036378 -
Lja1g0614 459 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 4 457 IPR044654 -
Lja1g0614 459 SMART fasc_3 83 188 IPR000782 -
Lja1g0614 459 SMART fasc_3 309 414 IPR000782 -
Lja1g0614 459 ProSiteProfiles FAS1/BIgH3 domain profile. 44 185 IPR000782 -
Lja1g0614 459 ProSiteProfiles FAS1/BIgH3 domain profile. 268 411 IPR000782 -
Lja1g0614 459 SUPERFAMILY FAS1 domain 247 415 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0614 Lja-Chr1 5652607 5655821 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0614 - - gmx:100818575 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0614 1 5652607 5655821 Lja1g0614 1 5652607 5655821 ECH