Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0610 ATGGACGCGGCGGCGGGACCGTGGACTTCTCCGATCAAATTCAAATCCCGATCCCTTTTCCCTCACAGGAAGTCTTCTCAGGAAAACTTGGATAGGTTTATTCCGAATAGGTCAGCCATGGACTTCAGTTACGCTCACTACATGCTCACGGAGGGAAGAAACAACAAGGAGGAGCCGGTGGTCACGTCGCCGTCCAAACAAGCTTACCGGAAAATGCTCGCCGAGGCTTTCAACATGAACCGGACGCGAATCTTGGCCTTCAAGAACAAGCCGCCTGAACTTGTTGAAGCCATACCCAAGGATTTCTTCTCCCCTCCTCCTCCTCAATCCAAATCTTCCAAGCCCAGACACATTCCTCAGAGTTCTGAGAGGACACTGGATGCCCCTGATATTGCAGATGACTTCTACTTGAATTTGCTTGACTGGGGTAGCAGTAATGTGCTGTGCATTGCTCTTGGAAGCACTGTGTATCTCTGGAATGCTGCTGATAGCTCCACTGCAGAACTTGTCACGGTGAATGAGGAAGAAGGTCCCATTACTAGTGTTAACTGGGCTCCTGATGGCCGACATTTAGCTGTTGGTTTGAACAATTCCATTGTCCAGTTGTGGGATTCTACTACTACTAGACTGCTGAGAGTACTCAGGGGTGGACATCGAGCAAGAGTAGGATCACTGGCATGGAACAATCACATCCTGTCCACAGGAGGAATGGAGGGTAGGGTGGTTAACAATGATGTGAGAATAAGGTCTCACATTGTTGAAACCTACAGGGGACACAACCAGGAGATGTGTGGGCTCAAATGGTCTCCCTCAGGACAACAATTGGCGAGTGGAGGCAATGATAATCTTGTTCACATATGGGACAGGTCAAGGGCCTCTTCCAACACGCCGACCCGCTGGCTACACCGGTTTGAGGAGCATGTAGCTGCTGTGAAGGCACTGGCCTGGTGTCCATTTCAGGGAAATCTTCTAGCTTCTGGTGGAGGAGGGAGTGACCAGTGCATCAAGTTTTGGAACACACATACTGGTGCATGCCTGAACACTGTCAACACTGGCTCTCAGGTGTGTGCCCTTCTTTGGAGCAAGAGTGAGCGAGAGTTGCTTAGCTCGCACGGTTTCACCCAGAACCAGCTCACTCTCTGGAAATACCCTTCTATGCTGAAGATGGCAGAGCTCAATGGTCATACCTCCAGGGTGCTGTACATGGCTCAGAGTCCAGATGGGTGTACTGTGGCCTCTGCAGCAGCTGATGAGACTCTTCGATTCTGGAATGTCTTTGGAACTCCAGAAGCAAGCAAACCATCCTCAAAGCCAAACCGCGAGCCTTTTGCTGATTTCAACCGTATCCGTTGA 1353 0.5048 MDAAAGPWTSPIKFKSRSLFPHRKSSQENLDRFIPNRSAMDFSYAHYMLTEGRNNKEEPVVTSPSKQAYRKMLAEAFNMNRTRILAFKNKPPELVEAIPKDFFSPPPPQSKSSKPRHIPQSSERTLDAPDIADDFYLNLLDWGSSNVLCIALGSTVYLWNAADSSTAELVTVNEEEGPITSVNWAPDGRHLAVGLNNSIVQLWDSTTTRLLRVLRGGHRARVGSLAWNNHILSTGGMEGRVVNNDVRIRSHIVETYRGHNQEMCGLKWSPSGQQLASGGNDNLVHIWDRSRASSNTPTRWLHRFEEHVAAVKALAWCPFQGNLLASGGGGSDQCIKFWNTHTGACLNTVNTGSQVCALLWSKSERELLSSHGFTQNQLTLWKYPSMLKMAELNGHTSRVLYMAQSPDGCTVASAAADETLRFWNVFGTPEASKPSSKPNREPFADFNRIR* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0610 450 ProSitePatterns Trp-Asp (WD) repeats signature. 411 425 IPR019775 -
Lja1g0610 450 Pfam WD domain, G-beta repeat 253 288 IPR001680 GO:0005515
Lja1g0610 450 Pfam WD domain, G-beta repeat 301 339 IPR001680 GO:0005515
Lja1g0610 450 Pfam WD domain, G-beta repeat 390 424 IPR001680 GO:0005515
Lja1g0610 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 425 IPR001680 GO:0005515
Lja1g0610 450 Gene3D - 80 427 IPR015943 GO:0005515
Lja1g0610 450 SMART WD40_4 342 382 IPR001680 GO:0005515
Lja1g0610 450 SMART WD40_4 207 245 IPR001680 GO:0005515
Lja1g0610 450 SMART WD40_4 385 424 IPR001680 GO:0005515
Lja1g0610 450 SMART WD40_4 166 204 IPR001680 GO:0005515
Lja1g0610 450 SMART WD40_4 297 339 IPR001680 GO:0005515
Lja1g0610 450 SMART WD40_4 249 288 IPR001680 GO:0005515
Lja1g0610 450 SUPERFAMILY WD40 repeat-like 133 425 IPR036322 GO:0005515
Lja1g0610 450 MobiDBLite consensus disorder prediction 429 450 - -
Lja1g0610 450 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 22 448 - -
Lja1g0610 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 288 - -
Lja1g0610 450 CDD WD40 155 424 - -
Lja1g0610 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 204 - -
Lja1g0610 450 Pfam Anaphase-promoting complex subunit 4 WD40 domain 171 229 IPR024977 -
Lja1g0610 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 425 - -
Lja1g0610 450 MobiDBLite consensus disorder prediction 99 123 - -
Lja1g0610 450 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 22 448 IPR033010 GO:0010997|GO:0097027|GO:1904668
Lja1g0610 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 213 IPR001680 GO:0005515
Lja1g0610 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 288 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0610 Lja-Chr1 5608339 5610407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0610 218 425 Miscellaneous Gene Families AT5G08390 22.170 1.23e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0610 K03363 - pvy:116113419 738.413