Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0600 ATGTCAAATTTCTCATCTTGGTTCTCTCGCTTTCGTTCTTCCTCCAAGTACTTGTTCCACCGCACTCTCCACCATTCCGCACCTCACCAAACCGCACCCTCAGCCGCAGCTGCCACTGTCTTCAACTCCCACAACAGAACAAGGAAGCCATGGATGCTTCCTCTGGCTCTCGCTGCTTCTGCTGGAGCACTTGCTCTTCAACCCCATTTCCACCCTTCCCTTTGTGACGCCCCTGATGCCAGTAACCGAGATGTGAGTTTTGGGGGCAAAGGTAGCACCCAGTATGTTGTTAAGGGATCACAGAAAGAATTTCCACAAGAGCTTCTCGAGGAGTTGAAAATCATCTGTCAGGATAACATATCACTTGATTATGACGAAAGATATGTCCATGGAAAACCACAAAATAGTTTTCACAAGGCTGTCAATAGCCCAGATGTGATTGTTTATCCAAGATCAGAAGAGGAGGTCTCCAAGATTCTCAAATTATGCAACAGCTACAAGATTCCTATTGTACCTTATGGTGGAGCTACATCAATTGAGGGTCACACTTTATCCCCCAATGGCGGGGTTTGCATTGACATGTCAATAATGAAAAGAGTGAAAGCATTACATGCTGATGACATGGATGTGGTTGTTGAGCCTGGAATTGGATGGATGGAGCTTAATGAGTATTTGGAACCTTATGGCTTATTTTTCCCACTTGATCCAGGTCCAGGTGCAAGCATCGGAGGCATGTGTGCTACACGTTGTTCTGGTTCGTTAGCTGTGAGGTACGGAACGATGCGTGATAATGTCATCAGTCTCAAGGTAGTTCTTGCTAATGGAGACATTGTGAAGACCGCATCTCGTGCAAGAAAGAGTGCGGCCGGGTATGACCTGACCCGCTTGGTGATTGGGAGTGAAGGAACTCTTGGTGTTATAACAGAAGTCACACTGCAGCTTCAGAAAATTCCCCAGTGCTCAGTGGTTGCAATGTGCAACTTCCCTTCTGTGAAGGATGCAGCTGATGTTGCTATCGCCACGATGATGTCTGGTATACAGGTGTCAAGGGTAGAGCTATTGGATGAAGTTCAAGTGAAAGCTATCAATATTGCTAATGGGAAAAATTTGCCTGAATGTCCAACTTTGATGTTTGAATTTATAGGAACAGAGGCATATGCACGTGAACAAACACAAATTGTTCGAAAACTTGTTTCTGAGCACAATGGTTCAGATTTTGTATTTGCAGAAGAGCCTGAAGCTAAAAAAGAACTTTGGAAGGTAAGGAAGGAGGCACTGTGGGCTTGCTTTGCGATGGAACCTGATATGGAGGCAATGATTTCGGATGTATGTGTTCCTTTATCTCACCTTGCTGATATAATTTCGAGGTCTAAAAAGGTGCTGGATACATCACCACTGACTTGCACAGTGATTGCTCATGCTGGTGATGGTAACTTCCACACGGTAATTCTATTTGATCCTTCCCAAGAAGAACAGAGGAAGGAGGCAGAGAGACTCAACCATTTTATGGTTCATGCTGCCCTGGCATTGGAAGGAACATGCACCGGTGAACATGGTGTTGGCACTGGAAAGATGAAGTATCTTGAAGAAGAACTCGGAGAGGAAGCATTGCGAACAATGAAGAAAATAAAAGCAGCCCTAGATCCCAACAATATTATGAATCCAGGAAAGCTCATCCCTCCTCATGTTTGTTTGTAA 1698 0.4482 MSNFSSWFSRFRSSSKYLFHRTLHHSAPHQTAPSAAAATVFNSHNRTRKPWMLPLALAASAGALALQPHFHPSLCDAPDASNRDVSFGGKGSTQYVVKGSQKEFPQELLEELKIICQDNISLDYDERYVHGKPQNSFHKAVNSPDVIVYPRSEEEVSKILKLCNSYKIPIVPYGGATSIEGHTLSPNGGVCIDMSIMKRVKALHADDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGASIGGMCATRCSGSLAVRYGTMRDNVISLKVVLANGDIVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLQLQKIPQCSVVAMCNFPSVKDAADVAIATMMSGIQVSRVELLDEVQVKAINIANGKNLPECPTLMFEFIGTEAYAREQTQIVRKLVSEHNGSDFVFAEEPEAKKELWKVRKEALWACFAMEPDMEAMISDVCVPLSHLADIISRSKKVLDTSPLTCTVIAHAGDGNFHTVILFDPSQEEQRKEAERLNHFMVHAALALEGTCTGEHGVGTGKMKYLEEELGEEALRTMKKIKAALDPNNIMNPGKLIPPHVCL* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0600 565 Gene3D - 437 518 - -
Lja1g0600 565 Pfam FAD linked oxidases, C-terminal domain 318 558 IPR004113 GO:0003824|GO:0050660
Lja1g0600 565 PANTHER D-LACTATE DEHYDROGENASE, MITOCHONDRIAL-RELATED 25 561 - -
Lja1g0600 565 SUPERFAMILY FAD-linked oxidases, C-terminal domain 321 561 IPR016164 GO:0003824|GO:0050660
Lja1g0600 565 Pfam FAD binding domain 144 280 IPR006094 GO:0050660
Lja1g0600 565 ProSiteProfiles PCMH-type FAD-binding domain profile. 140 317 IPR016166 GO:0071949
Lja1g0600 565 PANTHER D-LACTATE DEHYDROGENASE 25 561 - -
Lja1g0600 565 Gene3D - 519 559 IPR016171 -
Lja1g0600 565 SUPERFAMILY FAD-binding/transporter-associated domain-like 109 318 IPR036318 GO:0050660
Lja1g0600 565 Gene3D - 103 337 IPR016169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0600 Lja-Chr1 5481439 5491186 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0600 K00102 - gmx:100803612 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0600 1 5481439 5491186 Lja1g0600 1 5481439 5491186 ECH