Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0599 ATGAAATTCGGGGATGCATTCACTGAGTATCTGCAGGAGGAGGGGTTGTTGTTGGACGAGAAGTGTGCTCACATTGAATATATGAGGTTGAAACAAGTGTTGAAGACTTGTCAGAATTGCAAAGACACCACCACCTCTCTCCACAAAGATCAGTTATGTCAATGTATGTCACTCTTGCCCATTGTAATGATATTTTTTTTCCCACTTGTAGTATGTGATGAAAAGTTCTTCTCCGAGTTGATGAAGGAAGCATCGGATATAGTAGGGTACTTTAGTTCAAGAGTTAAGCATCTCCTTCATCTTCATGTGGCAAGAGGACTGCAAAGATATGTATTGCGTTTGCGCCAGTGCTTTAAAAATGATAGGCAAGCCCTTGCCCAAGAAGGAAGAATTTTGATTGAGTACATTGCAATGAATGCTATTGCAATGAGGAAAATACTTAAGAAATATGATAAAGTACATAGCTCTATGAATGGGAAGAATTTCAAATCTAGGATGCAAGCTGAACACATAGAACTTTTACACTCACCTTGGCTAATTGAATTGGGTGCTTTTTATCTGAATTCAACTGGTCGAGATGGTTGTGAGCTTGACGGAGTCTATGGTCACTTTTCATGTGATCTAGATGTAACTAAATCTTCAATGACGTTGGTGCTTCCAGTTTCTATTAAGCTCGAGTATGATCTAACTTGTGCAATTTGCCTGGATTTTGTGTTCAATCCATATACTCTGGGTTGTGGCCATATCTTCTGCAAGTCATGTGCTTGCTCAGCTGCCTCTCTGATGATTTTCCAAAGCCTTAAAGCCGCAAGTCCAGAGTCAAAGTGCCCTATATGTAGAGAGGTTGGAGTTTACTCCAAGGCAGTGCATATGTTAGAACTTGATCTGCTTATTAAAAAAAGGTGTAAAGATTACTGGAAAGAGAGGCTAGCTGATGAACGAGTTGATACGTTGAAGCAATCAAAGGAACACTGGAATTTTCAGTCCACATATGCAATTGGATTGCTGTAG 1011 0.3986 MKFGDAFTEYLQEEGLLLDEKCAHIEYMRLKQVLKTCQNCKDTTTSLHKDQLCQCMSLLPIVMIFFFPLVVCDEKFFSELMKEASDIVGYFSSRVKHLLHLHVARGLQRYVLRLRQCFKNDRQALAQEGRILIEYIAMNAIAMRKILKKYDKVHSSMNGKNFKSRMQAEHIELLHSPWLIELGAFYLNSTGRDGCELDGVYGHFSCDLDVTKSSMTLVLPVSIKLEYDLTCAICLDFVFNPYTLGCGHIFCKSCACSAASLMIFQSLKAASPESKCPICREVGVYSKAVHMLELDLLIKKRCKDYWKERLADERVDTLKQSKEHWNFQSTYAIGLL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0599 336 Pfam RING-type zinc-finger 231 277 IPR027370 -
Lja1g0599 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 331 IPR013083 -
Lja1g0599 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1-LIKE-RELATED 1 334 - -
Lja1g0599 336 ProSiteProfiles Zinc finger RING-type profile. 231 280 IPR001841 -
Lja1g0599 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 334 IPR033326 -
Lja1g0599 336 SUPERFAMILY RING/U-box 224 282 - -
Lja1g0599 336 CDD SPX_BAH1-like 2 160 - -
Lja1g0599 336 ProSitePatterns Zinc finger RING-type signature. 246 255 IPR017907 -
Lja1g0599 336 ProSiteProfiles SPX domain profile. 1 164 IPR004331 -
Lja1g0599 336 SMART ring_2 231 279 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0599 Lja-Chr1 5473271 5476066 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0599 K16275 - gmx:100781704 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0599 1 5473271 5476066 Lja1g0599 1 5473271 5476066 ECH