Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0596 ATGAAGAACATAATGGCAAGACCCATCAACGTTTTCTCCACAAAGCCCTCACCTCTGAGCACTTGGGTGGTGATACTGGTCCTCTGCATTCTGGGTTTCTACGCAGTGTATTTCCCTCGCTCAAATGCACCTTTTCCCACTCCCCTCAACTCCTCTAACCTCCAAACCCTCTTCCTCTCCACTTCCTCCAACTCCACCATCGCCTCCTACCTCCGCGCCCTCACCCTGCACCCTCACCTCGCCGGAACAGAACCCGCCGCCGACACCACTCGCTACGTTCTCAGCCACTTCACTTCCCTCGGCCTCCAAACCCACACCGCAACCTACAGAGCTCTCCTCTCCTACCCTCTGAGCTCCTCCCTCACCGCGCATTTCAGCGACGGCTCCTCCGTCGACCTCCCCCTAACCGAACCGGCCGGAGGACCGGGCGTGGTTCAACCTTACCACGCGTACTCCCCGTCCGGCTCGGTTCAGGCGAGGGTGGTGTTCGTGAACTATGGCAGGGAGAAAGACTACCGTGAGCTGGGGGTGAACGTTAGCGGGTGCATAGTGATAGCGAGGAAAGGTGGCGAGTTTGGGAGAGGCGCGGTGGTTGAGACGGCGGAGAAGAATGGGGCGGCGGCGGTGCTGATTTACGGCGACGGCGAAACGTGGCGGAATGGGTTTGAGAGGGGGAATGTGATGAGGGGTATAGGGGACCCACTTAGTCCTGGTTGGGCTGGGGTTGAAGGTGGTGAGAGCTTGGGTTTGGAAGATAGTGAGGTTTTGAAGAGGTTTCCCAAAATTCCATCCATGCCCCTCTCTGCTGAAGTTGCTGACTCCATTTTGTCCTCGCTTGGAGGTGCTCCGGTGCCCCTGGAGTGGAGGGGTGCCCTGAGGTCGAAGGTTAGCCATGTTGGTCCTGGTCCCACAGTGCTGAACTTCACTTACCAGGGTGAAAAGAAGATGGCCACCATTCAAAATGTTTTTGCTGTCATAAAAGGATCAGAAGAACCAGATCGATATGTTCTGCTTGGGAACCATAGAGATGCATGGACTTATGGTGCTGTTGATCCGAGCAGTGGGACAGCTGCCCTACTTGACATTGCTCGTCGATATTCTATTCTTTTGGGTTTGGGGTGGAAGCCAAGGAGGACAATCATTCTCTGTAGTTGGGATGCAGAGGAATTTGGAATGATAGGATCCACTGAGTGGGTTGAACAAAACCTTATCAATCTGGGTTCCAAAACTGTGGCATACCTTAATGTGGACTGTGCTGTTCAAGGCCCTGGTTTCTTTGTTGGCTCAACTCCTCAGCTTGACAGTCTTATTCTAGAGGTCACGAAAAAGGTCAAGGATCCTGATTCTGAAGACGTATCAGTATATGAGAGTTGGGCTGCAGCTGATGGAGGCAATAATATTCAGAGGCTCAGTGGAGTTGATTCTGATTTTGCTTCGTTTGTGCAACATGCAGGAATCCCATCTATTGATATTTATTATGGAAGAGATTTCCCTGTCTATCACACTGCTTTTGACTCCTATAACTGGATGGCGGAGCATGGAGATCCATTCTTCCAGCGCCATGTTGCTGTTACTGGAGTTTGGGGGCTTCTGGCTCTTCACCTTGCTGATGATTCTATTCTTCCTTTCAATTATGTTTCATATGCAAATGAGTTACAGTTGTACAATAACAGATTGAGTAACTTGTTAGATCAGAAAACTTCTCTGCATCCATTAGCGATGTCAATTCAAGAATTTGCCTTTGCTGCCAAAGAAGCTGATGATGAATTAAAGAAACTGAGATTACAAGAAACTGCAGATTGTTCTGTAGATATGAGAAAGCGAGCCTTGAATGATAGACTAATGCTTGTTGAAAAAGGCTTCCTGGATGCAGATGGACTTCAAGGAAGGCAATGGTTCAAGCATCTTGTGTTTGGGCCTTCCAGTGACCATGAAAGGTTAAATTTCTTCCCCGGGATTAGTGATTCTTTCACCCGGTCCACAAGCATAAGTGAAGGAGAAAGGGTGGCAGCTATTCAACATGAGGTCTGGAGGGTTTCCAGAGCCATTCATAGAGCTGCTTCTGCACTTAGAGGAGAATTCACCTAA 2088 0.4986 MKNIMARPINVFSTKPSPLSTWVVILVLCILGFYAVYFPRSNAPFPTPLNSSNLQTLFLSTSSNSTIASYLRALTLHPHLAGTEPAADTTRYVLSHFTSLGLQTHTATYRALLSYPLSSSLTAHFSDGSSVDLPLTEPAGGPGVVQPYHAYSPSGSVQARVVFVNYGREKDYRELGVNVSGCIVIARKGGEFGRGAVVETAEKNGAAAVLIYGDGETWRNGFERGNVMRGIGDPLSPGWAGVEGGESLGLEDSEVLKRFPKIPSMPLSAEVADSILSSLGGAPVPLEWRGALRSKVSHVGPGPTVLNFTYQGEKKMATIQNVFAVIKGSEEPDRYVLLGNHRDAWTYGAVDPSSGTAALLDIARRYSILLGLGWKPRRTIILCSWDAEEFGMIGSTEWVEQNLINLGSKTVAYLNVDCAVQGPGFFVGSTPQLDSLILEVTKKVKDPDSEDVSVYESWAAADGGNNIQRLSGVDSDFASFVQHAGIPSIDIYYGRDFPVYHTAFDSYNWMAEHGDPFFQRHVAVTGVWGLLALHLADDSILPFNYVSYANELQLYNNRLSNLLDQKTSLHPLAMSIQEFAFAAKEADDELKKLRLQETADCSVDMRKRALNDRLMLVEKGFLDADGLQGRQWFKHLVFGPSSDHERLNFFPGISDSFTRSTSISEGERVAAIQHEVWRVSRAIHRAASALRGEFT* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0596 695 Gene3D - 119 312 - -
Lja1g0596 695 Coils Coil 576 596 - -
Lja1g0596 695 Pfam Peptidase family M28 321 508 IPR007484 -
Lja1g0596 695 CDD M28_PSMA_like 317 543 - -
Lja1g0596 695 Gene3D Zn peptidases 65 542 - -
Lja1g0596 695 SUPERFAMILY PA domain 112 323 IPR046450 -
Lja1g0596 695 Coils Coil 545 565 - -
Lja1g0596 695 PANTHER F10A2.10 PROTEIN-RELATED 39 695 - -
Lja1g0596 695 Gene3D - 545 695 IPR036757 -
Lja1g0596 695 SUPERFAMILY Zn-dependent exopeptidases 62 540 - -
Lja1g0596 695 Pfam PA domain 157 220 IPR003137 -
Lja1g0596 695 Pfam Transferrin receptor-like dimerisation domain 568 690 IPR007365 -
Lja1g0596 695 SUPERFAMILY Transferrin receptor-like dimerisation domain 542 693 IPR036757 -
Lja1g0596 695 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 39 695 IPR039373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0596 Lja-Chr1 5442641 5448694 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0596 K01301 - gmx:100818733 1144.8