Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0589 ATGGCGGTTTCCGAAGAAGAATGCTCTTCCACCAAGCCCGGTCCATCTTCCTCTTCTTCTTCCACCTCTCGCTACTACCTCTCAAAGTCCCTCCTCCGACCAGGCGCCATTCTCCACGTCCTCTACGCTCATATCCGCTCTCCCTCCTCCAACGACATCGTTTTCGCCAAGGAGACATCTATAGAGTTGGTGGTTATTGGTGAGGATGGGAATGTTCTAACTCTCAGTGATCAGCCTGTTTTTGGCACCATTAAAGATCTTGCTGTATTGCCCTGGAATGACAAATTCCGCGGTGCCCGTGATCCCAAGATGTGGGGTAAAGACCTTTTGGTTGCTCTATCTGATTCCGGGAAGCTGTCCGTGCTCACATTTTGCAATGAAATGCACAGGTTTTTTCCTACAACACATGTTCAGCTATCCAATCCTGGAAACATTAGGGATGTTCCGGGAAGAATGCTAGCAGTTGATTCCAGTGGTTGTTTTATTGCTGCCAGTGCATATGAAGGTCGTCTGGCTCTGTTTTCAATGTCAATGACTGGCAATGATATCATTGATGAGAGAATAATGTATCCTTTGGAAGGTGAAGGGACTGCAAGTAGTTCCAGAAGCATCCAGAAAACCAGTATACATGGTGCTATTTGGAGTATGTGTTTTATTTCTCAAGATTCCAGACAACTAAGCAAGGAGCATAATCCTGTACTAGCTGTTATTATAAATAGGAAGGGAGAATATGAATTGCAATTATTGGAATGGAATGTTAAAGCCCAGACAATCTTTGTTATTTCTTCAAATGTTGAAGCTGGGCCTTTAGCACTTAACATTGTTGAAGTTCCTAACTCTCAGGGACTCGCACTTCTATTCAGGGATGGTGATGTTCTCTTAATGGATTTTAAAGATCCTCACAATCCATGTTGTGTCTACAAGACTAGCTTACACTTTTTACCTAGTGCCACGGAAGAGCAAACTTTCATGGAAGATTCTTGTAAATTACACGATGTGGATGATGAACGCTTTAGTGTAGCTGCCTGTGCTTTGTTGCAGCTGAGTGATTATGATCCTATGTGCATCGACAGTGACAATGACGGCACTAATACAGGTCACAAGCATGTATGCTCTTGGAGTTGGGAACCTGAAAATAATAGAGATCCAAGGATGATCTTTTGTGTAGATACTGGAGAACTTTTTATGATCGAAATTTTTTCTGATGCTGATGGGCCGAAAATTAGTCTCTCTGAGTGTTTGTATAAAGGCCTACCTTGTAACGCACTTTTGTGGGTTGAAGGTGGATATCTAGCTGCTTTTGTAGATATGGCAGATGGCATGGTCCTGAAATTGAAAGATGGAAGGCTTTGCTATACAAACCCTATTCAAAACATTGCACCAATCTTGGATGTGGCAGTTGTGGATTATCATGATGAGAAGCATGACCAAATGGTTGCTTGCTGTGGTGTGGCACCTGAGGGGTCATTAAGGATTATTCAAAGTGGTATCAATGCAGAAAAGCTACTTAGGACCCCTTCTATATATGAGGGGATATCTGGCACTTGGACTGTTCGAATGAAAGTTACTGATTCTTATCATTCTTTTCTAGTTTTATCATTTCTTGCGGAGACTAGAATCTTGTCAGTTGGCTTAAGTTTTACTGATGTGACTGATTCTGTTGGTTTCCAACCTAATGTCTGTACTTTGGCATGTGGCCTTGTGAGTGATGGTTTGCTGGTTCAGATCTGCCAATCTTCTGTTAAGCTTTGTTTGCCTACAAAGGCCGCTCATTCTGAAGGTATCCCTTTGTCCTCTCCCATTTGCACATCTTGGTCCCCTAACAATTTGAATATCAGCTTGGGGGTAGTTGGGCATGGTTTCATAGTTGTATCAACCTCTAACCCATGCTTCTTATTCATCCTTGGGGTTAGATTGCTATCAACTTATCAATATGAAATTTATGAAATGCAACATTTGGGACTGCTGAACGAATTATCATGCATTTCCATCCCTACACAAAAAAATGAGAAAACAGAATCAAATTCAACCATTTCAGCAAATAATAGCTGCATTCCTTCGTTTCTAAGTGGAGTGGATGTCAATAAAACCTTTGTTATTGGCACACATAGGCCTTCCGTGGAAATTTGGTCTTTTGCACCAGATGGAGGAGTTAAAGTAGTTGCTTGTGGGACAATTTCGTTAACAAATACAACGGGGACTGCTATAGATTTCTGTGTACCTCAAGATGTACGGCTTGTATTTGTTGATAAGTATTATGTTCTAGCTGGACTGAGGAATGGAATGCTCCTTCGCTTTGAATGGCCAGCAGAACCATCTCCTACATCACCAATAAATGTGGTGGACACTGCTTTATCTTCCATAAATTTAGTAAATTCTGCGACCACGGCTTTTGAGAAGAGAAATGACCTTCCTTCCACACTGCAATTGATTGCCATTCGTCGCATTGGTGTTACTCCAGTTTTCTTGGTGCCCTTGAATGACACACTTGATGCTGATATAATTGCTTTAAGTGATAGGCCTTGGTTGTTGCATAGTGCAAGACATAGCCTTTCCTATACTTCTATCTCATTTCAACCATCCTCACACGTGACTCCTGTATGCTCTCTTGAGTGTCCGAGAGGAATTTTATTTGTTGCAGAAGACAGTTTACATCTGGTGGAGATGGTCCACAGCAAGAGACTTAATATGTGGAAGTTTAATTTAGAGGGGACTCCACGGAAGGTCTTGTATCACAACGAAAGCCGGATGTTGCTTGTGATGAGGACTGAATTGGATTGTGGTACATGTTTGTCTGACATAAGTTGTGTGGACCCCCTAAGCTGGTCAGTAGTGTCTTCTTTCAGACTTGAACCTGGAGAAACAGGAAAGTCCATGGAATTAGTCAGGTTTGGAAGTGAGCAAGTTCTTGTGGTTGGAACTAGTATGTCTTCTGGTCCAGCCATAATGCCCAGTGGTGAAGCTGAGAGTGCTAAAGGTCGTCTTCTGGTTCTCTGTCTTGATCATGTGCAAAATTCAGATAGTGGTTCAATGACATTCTGTTCAAAAGCAGAGTCATCATCTCAAAAAACTTCACCTTTCCATGAAATTGTTGCATATGCTCCTGAACAGCTATCATGCAGTAGCCTTGGCAGCAGCCCTGATGATAATAGTTCGGATGGCATCAAACTTGATGAAAATGAAGTATGGCAGTTCCGTTTGGCTTATGCAACTACCTGGCCGGGAATGGTACTTGCGATCTTTCCTTATCTTGATCGTTACTTCTTGGCATCTGCTGGCAATGTTTTCTATGTTTGTGGTTTCCCAAATGACACTCCTCGGAGAGTGAGAAGGTATGCTATGGGAAAGACGCGCTTCATGATTACATCTTTGACTGCACATTTTACTAGAATTGCAGTTGGTGATTGTCGTGATGGTATCCTGTTCTTTTCTTACCATGAGGAAGGAAAAAAGTTGGAGCAACTTTATTGTGACCCATCAGTGAGGTTGGTTGCTGATTGCATTCTCATGGATGATAATACCGCTGTCGTTTCAGATCGTAAAGGAAGCATTGCTGTTTTATCCTCAGACCATTTGGAAGACAATGCAAGTCCGGAGTGCAACTTGACACTAAGCTGTGCTTATTTCATGGCTGAAGTAGCTATGAGCATCCGGAAGGGCTCGTATTCGTACAGACTTCCTCCGGCTTACGATGTTTTACCAGGTGACAATGGCCCTGGTGACACACTACGAAATACTATTATTGCCAGTACTCTGTTAGGAAGCATAATGATTTTCATCCCTTTATCAAGGGAAGAATACGAGCTCCTAGAGGCTTTGCAAGCAAGACTTGTTCTCCATCATTTGACTGCGCCTGTTCTTGGAAATGATCATAATGAGTTTCGTAGCCGTGAAAATCCAGTTGGAGTACCCAAGATACTTGATGGTGACATGTTGACTCAGTTTCTAGAGTTAACAAGTATGCAGCAAAATACAATATTGTCTTCAGAGCTACCGGATAAGGCAAAACCAAGCTTGAAGCCACTCCTGCCACCACATGTTTCTGTTAATCGGGTGGTTCAACTTCTTGAACGAGTTCATTATGCACTGAACTAA 4095 0.4232 MAVSEEECSSTKPGPSSSSSSTSRYYLSKSLLRPGAILHVLYAHIRSPSSNDIVFAKETSIELVVIGEDGNVLTLSDQPVFGTIKDLAVLPWNDKFRGARDPKMWGKDLLVALSDSGKLSVLTFCNEMHRFFPTTHVQLSNPGNIRDVPGRMLAVDSSGCFIAASAYEGRLALFSMSMTGNDIIDERIMYPLEGEGTASSSRSIQKTSIHGAIWSMCFISQDSRQLSKEHNPVLAVIINRKGEYELQLLEWNVKAQTIFVISSNVEAGPLALNIVEVPNSQGLALLFRDGDVLLMDFKDPHNPCCVYKTSLHFLPSATEEQTFMEDSCKLHDVDDERFSVAACALLQLSDYDPMCIDSDNDGTNTGHKHVCSWSWEPENNRDPRMIFCVDTGELFMIEIFSDADGPKISLSECLYKGLPCNALLWVEGGYLAAFVDMADGMVLKLKDGRLCYTNPIQNIAPILDVAVVDYHDEKHDQMVACCGVAPEGSLRIIQSGINAEKLLRTPSIYEGISGTWTVRMKVTDSYHSFLVLSFLAETRILSVGLSFTDVTDSVGFQPNVCTLACGLVSDGLLVQICQSSVKLCLPTKAAHSEGIPLSSPICTSWSPNNLNISLGVVGHGFIVVSTSNPCFLFILGVRLLSTYQYEIYEMQHLGLLNELSCISIPTQKNEKTESNSTISANNSCIPSFLSGVDVNKTFVIGTHRPSVEIWSFAPDGGVKVVACGTISLTNTTGTAIDFCVPQDVRLVFVDKYYVLAGLRNGMLLRFEWPAEPSPTSPINVVDTALSSINLVNSATTAFEKRNDLPSTLQLIAIRRIGVTPVFLVPLNDTLDADIIALSDRPWLLHSARHSLSYTSISFQPSSHVTPVCSLECPRGILFVAEDSLHLVEMVHSKRLNMWKFNLEGTPRKVLYHNESRMLLVMRTELDCGTCLSDISCVDPLSWSVVSSFRLEPGETGKSMELVRFGSEQVLVVGTSMSSGPAIMPSGEAESAKGRLLVLCLDHVQNSDSGSMTFCSKAESSSQKTSPFHEIVAYAPEQLSCSSLGSSPDDNSSDGIKLDENEVWQFRLAYATTWPGMVLAIFPYLDRYFLASAGNVFYVCGFPNDTPRRVRRYAMGKTRFMITSLTAHFTRIAVGDCRDGILFFSYHEEGKKLEQLYCDPSVRLVADCILMDDNTAVVSDRKGSIAVLSSDHLEDNASPECNLTLSCAYFMAEVAMSIRKGSYSYRLPPAYDVLPGDNGPGDTLRNTIIASTLLGSIMIFIPLSREEYELLEALQARLVLHHLTAPVLGNDHNEFRSRENPVGVPKILDGDMLTQFLELTSMQQNTILSSELPDKAKPSLKPLLPPHVSVNRVVQLLERVHYALN* 1365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0589 1364 Gene3D - 36 449 IPR015943 GO:0005515
Lja1g0589 1364 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 20 1361 - -
Lja1g0589 1364 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) A SUBUNIT PROTEIN 20 1361 - -
Lja1g0589 1364 Pfam CPSF A subunit region 932 1317 IPR004871 GO:0003676|GO:0005634
Lja1g0589 1364 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g0589 1364 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 108 664 IPR018846 -
Lja1g0589 1364 Gene3D - 500 894 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0589 Lja-Chr1 5374511 5384990 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0589 K12830 - gmx:100806799 2191.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0589 1 5374511 5384990 Lja1g0589 1 5374511 5384990 ECH