Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0581 ATGATGCTCAGAATTCGCAGCCGCGACGGCCTTGAGCGAGTCACCGTCGACAACCCTCACACCACAACAGTCTCAGAACTGAGAAGGCTAATCGAGCACCAGTTAGGAATCCCAACCCACAACCAAACCCTCTCCACCAACCAGAACCTTCTACTCTCCAAGTCGCCGGAAGATCTCCTCCGATTCACCGACATGACAAACCCTAACGCGCCTCTCTCCGCTCTCAACCTCGGTCACGGCTCCATCGTGTTCCTCGCCTACGACGGCGAGCGGAGGGTGCCTGGCCCCGCCGTCTTCAGCCCTGCCGGCTCGTTTGGCCGGAAGATGACCATGGACGATCTCATCGCCAAGCAGATGCGGGTTTCCCGCCAGGAGAATCCTCACTGCGAGCTTGTTTCATTCGACCGCGACTGCGCCAACGCGTTCCAGCACTATGTTAACGACTCGCTGGCGTTTGCGGTGAAGCGCGGCGGGTTTATGTACGGTACTGTTTCTGAGGAGGGGAAGGTTGAGGTGAACTTCATATACGAGCCTCCGCAGCAGGGAACGGAGGAGAGTCTGCTGTTTTTCAGGGACCCGGAGGAGGAGAAACTGGTGGGTGCTATTGCGGCGGGGTTGGGGATGAGGAGTGTAGGGTTCATCTTCACGCAGACGGTGAGTCAGGCGAAGAAGGACTATACTTTGTCCAACAGGGAGGTGCTTCAGGCCGCGGAGTACCATGCTGAGAGTGGCTTGAAGGAGTGGGTTACCGCTGTGGTTAAGCTTGAGGTGAATGAGGAAACGGGTGGTGCTGATGTTCACTTTGAAGCGTTTCAGATGAGTGATGTGTGCATTCGCTTGTTCAAGGAAGAGTGGTTTGATACCGATATTAAGGAGGATCAAGACCCCAAGTTGTCTATAATGAAGAAGGAGGTGGTTGTTGGGGTAAAGGATATCAAAGAAGTTGATAATGATTTCTTCTTGGTCGTTGTCAAAATCTTTGATCATCAGGGTCCTCTTTCAACAACATTTCCCATTGAGAACAGGAATACTCAAGTGCCTATGAGGGCACTGAAGAACCATCTTGAACGGACAAAAAATCTTCCATTTGTGAAGCGGATTGCCGATTTTCACCTTCTTCTTGTGTTAGCAAGGTTTTTAGACCTTAACGCCGATGTTCCAGCTTTGACGGAATGCATTCAGACAGAGACTACTGTGCCAGAAGGTTACCAGATCCTCATTGACTCCATGGCCAGCGCTGCTTGA 1245 0.5221 MMLRIRSRDGLERVTVDNPHTTTVSELRRLIEHQLGIPTHNQTLSTNQNLLLSKSPEDLLRFTDMTNPNAPLSALNLGHGSIVFLAYDGERRVPGPAVFSPAGSFGRKMTMDDLIAKQMRVSRQENPHCELVSFDRDCANAFQHYVNDSLAFAVKRGGFMYGTVSEEGKVEVNFIYEPPQQGTEESLLFFRDPEEEKLVGAIAAGLGMRSVGFIFTQTVSQAKKDYTLSNREVLQAAEYHAESGLKEWVTAVVKLEVNEETGGADVHFEAFQMSDVCIRLFKEEWFDTDIKEDQDPKLSIMKKEVVVGVKDIKEVDNDFFLVVVKIFDHQGPLSTTFPIENRNTQVPMRALKNHLERTKNLPFVKRIADFHLLLVLARFLDLNADVPALTECIQTETTVPEGYQILIDSMASAA* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0581 414 CDD MPN_NPL4 120 376 IPR007717 -
Lja1g0581 414 Gene3D - 1 101 - -
Lja1g0581 414 Pfam NPL4 family 158 242 IPR007717 -
Lja1g0581 414 Pfam Nuclear pore localisation protein NPL4 1 50 IPR024682 -
Lja1g0581 414 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 103 411 IPR016563 GO:0006511
Lja1g0581 414 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 2 94 IPR016563 GO:0006511
Lja1g0581 414 CDD Ubl_AtNPL4_like 1 85 - -
Lja1g0581 414 ProSiteProfiles Ubiquitin domain profile. 1 51 IPR000626 GO:0005515
Lja1g0581 414 ProSiteProfiles MPN domain profile. 131 277 IPR037518 -
Lja1g0581 414 SUPERFAMILY Ubiquitin-like 1 89 IPR029071 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0581 K14015 - gmx:100811623 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0581 1 5283552 5287707 Lja1g0581 1 5283552 5287707 ECH