Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0575 ATGGCTGACGCATTTCGTTCTCAACCTTCATCGCCACCTCCTGCTGGGGGTATGGTCGAAGATGCAAAGGAAGGTGGGCAGTTTCAGGAAACTGAGCTCTTTGAGGACACCTTGGTCATAAATAGTCCCTTCACTGAGGTGGAAAATCTCAGTGTGAATACTGAGGTTATAGATGATTCGGATTCGGATACTGTCGAATGCAGGACAACTGGTCCTGTATCTGAGCATGAACAAGAAGTAGTGCTTGATAGTGAGGATGAAGAAATGAATAGTGCAGGTGCAATGACTGTTGCCAAAGGATTTCTTGAGGATGAAACTGGTCCAAAAGTGAGAAATCTTTCGATGCTCTTCAAGAAGAGACGGCTTCAGCCACCTTGTGAGCAAGCACACTCAAATGCCATCAATTTTGGGAAATCTGCTGCTACTGGGTTAAATCACATTCACTCACCACAGCCTGCTGATTCAACCCAAGAAGCACTAGGCTTCGTGGATCAGTACTTGTCATCAAACAGCATGGACTCTTTTGAAGGAATTCATTGTAGAAAAATCACTAGGGAGAAATCACCTAATGTCATGATTGCAGGAGGAGTAGGACCATTGAGCCTGGCTAAGAAAATTAAAGCTCGAACTCATAATGAAGCAAAAGAACCTTTCAAGTGGGTTGGCTGTGATAAAAATGACAAAAATGCTGATATCTTCTGTGAAAAAGTTGAAGCATCAGCAAATTTTAGAAGCTACAGACTGGCATATAAGAGAAGACGACAGAAAAAAGATGATCCTCTTCAGAACCAAGGAAACTGCAGTCCAGGTAATAGATGTGATAAGTCAGTCCAAGGACCAAGGATGGCAACTGAAAATAATAACTCTCTTAAGGAGCTGGATGCTGAGTTAAGGGCTACAAGAGAGAATCTTAATGTCTATTCCAATGTACCACATACAGAAGGCATGTATGATATTGGTTTAGACACTCAAATAGCTGCTGAAGCAATGGATGCATTAGCCAACGAGCCCCCTCCTGCCTTCTGTTTTAATGATGCTGATCAACCAGAGAATGCATTTGGTGGTTCTTTGAGCGATTTGAATGAAGATTGTCAAAAAAGTTATTCATATAGACAGGATCCTGCTTTACATTCTGTCACACTAAAATCAAATAAGATAAATGTATCTTCATGTAGATTCCGCAAACTGACTTCTAGTTCCTCTTGTTTGGATACTGAAAATCAGGAGCCAAACTGTGTCACAGGAAAAACGAAAAAGATGATGAAAAGCAAGTCAACGGTTGAGGGACAGTTTGGGAATGATACTAGTAAACCAATATACAGTGAACATGTACCACTTGAAGATGGTTGCTCACTAGGAAAGTATGTAAGTTTTCAACCTTCCGCCAGAGAACCCAGAAATTTGAGTAATGAGAGCAAATGGACAAGGATCAAAGATCAACCAAGCCATCATACAGCGAAGGACAATAATGTCAAGGAAAAGGGTGTTATTAGACACAAGAAGGGAAATGGTTTAGTGGCTGATCCAGTGAAGTTGGGTGTTAAGACAAAACATCCCAAACTGCCTACCAATTCATGTGGGGAGGCTAGGAAAAGCAGGTTGAATCATCAGGTTCTAGTTAGTCCACGGCTATCTGCAACCAGCAGTTTTTCCAGTATGGATTCATGGGTTTACCCAAAAAGACCAAGGGGGAAAGGAAAGCGGGCTAATGTGCAAATCAATCCTAATGCACCCGCAACTTTGTGTATTGATGGAAAAGAAAGCAACATCTACTCCACTAGATGTCTAGAAGGTCAAGATGTGGATAAATCATTTAACAGGTTGAATCATCAGGTTCTAGTTAGTCCACGGCTATCTGCAACCAGCAGTTTTTCCAGTATTGATTCATGGGTTTACCTAAAAAGACCAAGAGGGAAAAGAAAGCGGGCTAATGTGCAAACCAATCCTAATGCCCCCGCAACTTTGTGTATTGATGGAAAAGAAAGCAACATCTACTCCACTAGATGTCTAGAAGGTCAAGATGTGGATAAATCATGTAACACACGGTCACCTTGCAATGCTTCATCTATTGTCAATGGAAGATGTGTGTTGCAGGGGACCTATGTTCAACCAGGTTCAGCTGGTAATGCCATAACATCTGAAGAAAACCTGCATGATATCCGTCCATTATTGCAGGCACATGTTGAAATATTGTCAAACAAGAGCGCTGCAAAACTAGGTTTAGATATTCCTGCTACAGTAGCCTCAAGTGAAAGCATAAAGATTTCAAATGCTAGCCACACATACAACAAGAATCACAAAAAGTCATGTGACAAAAGCCTGCCAAAGTCTTCACTTTTGAAGGAGCTTATCAGATTAGGAGTTCCCGAGTCTTCGCCAGTTTTGGTATGGAGAGATCTGAGACATAGAAGAGATATGGCACATGTTCGAGTTTTGTTTAGCCAACATTTGGAGGACAGTGTCATCAAGAAGCAAAAAAAGATCTTGGCACGTTTCAATATACCTATTGCATCAAGCTCAATGGAGGCCACACACTTTGTAGCAGACAAATTTACACGTACAAAGAATATGTTGGAAGTAATGGCTCTTGGGAAAATAGTGGTGACCCACTTATGGCTTGAGAGCTGTGGACAAGCCAACTGTTTTATTGATGAGAAAAATTACATTCTGAGGGATATGAAAAAGGAAAAGGAAATAGGCTTTAGCATGCCTGCTTCTCTCGCTCGAGCAAGACAGAAGCCTCTCCTGAAGGGTAGGAGAGTCTACATCACACCCCACATTAAACCTGATAAGGAAATGGTCACAAACTTGGTCACAGCTGTTCATGGCCAGGTATTGGATGAAAGTCAGATATGTGGAGATAAGAATGATAATATCTTAGATGATCTGCTGATTCTTTCTTGTGAAGATGACTATGCAATATGCTGTGATTTCCTTAAGAGAGGGACTGCTGTTTATAGCTCAGAGCTTGTCCTGAATGGAATTGTAGTCCAGAAGTTGGAATTTGAGAGACATAAACTCTTCATGAATCAAGTTAGAAGGATCAACCCAAGTACGTCTAATCGATTTGGGAAGGTTTACAGAAGGCGTTGA 3093 0.4135 MADAFRSQPSSPPPAGGMVEDAKEGGQFQETELFEDTLVINSPFTEVENLSVNTEVIDDSDSDTVECRTTGPVSEHEQEVVLDSEDEEMNSAGAMTVAKGFLEDETGPKVRNLSMLFKKRRLQPPCEQAHSNAINFGKSAATGLNHIHSPQPADSTQEALGFVDQYLSSNSMDSFEGIHCRKITREKSPNVMIAGGVGPLSLAKKIKARTHNEAKEPFKWVGCDKNDKNADIFCEKVEASANFRSYRLAYKRRRQKKDDPLQNQGNCSPGNRCDKSVQGPRMATENNNSLKELDAELRATRENLNVYSNVPHTEGMYDIGLDTQIAAEAMDALANEPPPAFCFNDADQPENAFGGSLSDLNEDCQKSYSYRQDPALHSVTLKSNKINVSSCRFRKLTSSSSCLDTENQEPNCVTGKTKKMMKSKSTVEGQFGNDTSKPIYSEHVPLEDGCSLGKYVSFQPSAREPRNLSNESKWTRIKDQPSHHTAKDNNVKEKGVIRHKKGNGLVADPVKLGVKTKHPKLPTNSCGEARKSRLNHQVLVSPRLSATSSFSSMDSWVYPKRPRGKGKRANVQINPNAPATLCIDGKESNIYSTRCLEGQDVDKSFNRLNHQVLVSPRLSATSSFSSIDSWVYLKRPRGKRKRANVQTNPNAPATLCIDGKESNIYSTRCLEGQDVDKSCNTRSPCNASSIVNGRCVLQGTYVQPGSAGNAITSEENLHDIRPLLQAHVEILSNKSAAKLGLDIPATVASSESIKISNASHTYNKNHKKSCDKSLPKSSLLKELIRLGVPESSPVLVWRDLRHRRDMAHVRVLFSQHLEDSVIKKQKKILARFNIPIASSSMEATHFVADKFTRTKNMLEVMALGKIVVTHLWLESCGQANCFIDEKNYILRDMKKEKEIGFSMPASLARARQKPLLKGRRVYITPHIKPDKEMVTNLVTAVHGQVLDESQICGDKNDNILDDLLILSCEDDYAICCDFLKRGTAVYSSELVLNGIVVQKLEFERHKLFMNQVRRINPSTSNRFGKVYRRR* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0575 1030 CDD BRCT_MDC1_rpt1 809 883 - -
Lja1g0575 1030 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 606 1012 - -
Lja1g0575 1030 MobiDBLite consensus disorder prediction 469 492 - -
Lja1g0575 1030 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 606 1012 - -
Lja1g0575 1030 SUPERFAMILY BRCT domain 803 906 IPR036420 -
Lja1g0575 1030 ProSiteProfiles BRCT domain profile. 840 890 IPR001357 -
Lja1g0575 1030 CDD BRCT_PAXIP1_rpt6_like 915 1001 - -
Lja1g0575 1030 MobiDBLite consensus disorder prediction 461 492 - -
Lja1g0575 1030 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 20 602 - -
Lja1g0575 1030 Gene3D BRCT domain 914 1014 IPR036420 -
Lja1g0575 1030 Gene3D BRCT domain 798 913 IPR036420 -
Lja1g0575 1030 MobiDBLite consensus disorder prediction 253 287 - -
Lja1g0575 1030 Coils Coil 283 310 - -
Lja1g0575 1030 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 807 890 IPR001357 -
Lja1g0575 1030 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 20 602 - -
Lja1g0575 1030 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0575 Lja-Chr1 5225331 5229898 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0575 K14972 - gmx:102659913 658.677