Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0573 ATGTTAAGACTTGGTTTGAGCAGTCAAAAGGCTTGCTACTCAAGGTCTTCGGTTGCTGAGAGCTTCCACAGGTTATTGTCTACTCAGACTGGAAGGAAGCTACAAGACAAGGTAGCATTGATCACCGGGGCAGCTAGTGGAATAGGAAAAGCTGCAGCAACAAAATTTATCAACAATGGAGCCAAGGTTATTATTGCTGATATCCAACAAAAACTTGGCCAAGAGACTGCGAAAGAGCTAGGACCTAATGCCACCTTCATAACATGTGATGTCACAAAAGAGTCAGATATATCCAATGCTGTTGAGTTTGCTATTTCTGAATACAAACAGCTTGATATCATGTACAACAATGCAGGAGTACCCTGCAGAACTCCTGGAAGCATTGTTGATCTGGACCTGGCATCTTTTGACAGAGTCATGGATATAAATGTTCGTGGGGTTATGGCGGGCATCAAGCACGCAGCGCGCGTAATGATCCCGCGTGGAGCCGGGTCCATTCTCTGCACAGCCAGTGTCACTGGAGTGATGGGAGGGTTGGCTCAGCACACATACTCAATCTCCAAGTTTACAGTCATAGGCATTGTTAAATCTCTGTCTTCAGAGCTGTGTAGGCATGGAATCAGAGTCAATTGCATATCACCCATTGCTATACCTACTTCTTTTGTCATGGATGAAATGAGTCACATTTATCCACATCTTGATGCTCAGAAGCTTGTAGACATTGTTCATAATACCGGTGTCCTTAAGGGAGCAAATTGTGAACCCAGTGATGTTGCCGACGCTGCACTTTATCTTGCATCTGATGATGCCAAGTATGTTAGTGGGCATAATTTGGTTGTGGATGGAGGTTTCACATCTTTTAAGAATCTTGAGTTTCCTGCACCAGATAAAGTACATTAG 900 0.44 MLRLGLSSQKACYSRSSVAESFHRLLSTQTGRKLQDKVALITGAASGIGKAAATKFINNGAKVIIADIQQKLGQETAKELGPNATFITCDVTKESDISNAVEFAISEYKQLDIMYNNAGVPCRTPGSIVDLDLASFDRVMDINVRGVMAGIKHAARVMIPRGAGSILCTASVTGVMGGLAQHTYSISKFTVIGIVKSLSSELCRHGIRVNCISPIAIPTSFVMDEMSHIYPHLDAQKLVDIVHNTGVLKGANCEPSDVADAALYLASDDAKYVSGHNLVVDGGFTSFKNLEFPAPDKVH* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0573 299 Gene3D - 25 291 - -
Lja1g0573 299 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 22 291 - -
Lja1g0573 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 285 IPR036291 -
Lja1g0573 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 109 120 IPR002347 -
Lja1g0573 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 184 203 IPR002347 -
Lja1g0573 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 172 IPR002347 -
Lja1g0573 299 Pfam Enoyl-(Acyl carrier protein) reductase 43 285 - -
Lja1g0573 299 PRINTS Glucose/ribitol dehydrogenase family signature 109 120 IPR002347 -
Lja1g0573 299 PRINTS Glucose/ribitol dehydrogenase family signature 205 222 IPR002347 -
Lja1g0573 299 PRINTS Glucose/ribitol dehydrogenase family signature 158 174 IPR002347 -
Lja1g0573 299 PRINTS Glucose/ribitol dehydrogenase family signature 184 203 IPR002347 -
Lja1g0573 299 PRINTS Glucose/ribitol dehydrogenase family signature 248 268 IPR002347 -
Lja1g0573 299 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Lja1g0573 299 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 22 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0573 Lja-Chr1 5215620 5218724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0573 12 284 Acyl Lipid Metabolism Gene Families AT1G24360 27.368 2.86e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0573 - - gmx:100814306 471.47