Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0562 ATGGGAACCCAGTCTAAGCCTGATGTGGACGGTGTCCACAGTGATGTGAAGGTGGTGGAGAAGCCAACAAGGACAAGGCCTTACGATGTGTTGCTTCGATTTCTTGCACTGTCACTCACTCTGGTGGCTACTATCATTGTGGCGGTTAACAAGGAGACAAAGACCATCTCCTATGCTGGAATGCAGTTCAAAGCCACTGCTAAGTGGGAATACATGTCTGCTATTGTGTTTTTCTTGGTGTCAAACGCTATTGGATGCTCCTATGCAGCTGCTTCTCTAGCCATCTCAATGGTTTCAAGAACCAGTGGAAACAAAACGGCACCGTTCCTGCTAACAGTGCTGGACCTTGTGATCATGGCGCTTCTGTTCTCAGCCAATGGCGCAGCCGCTGCAGTGGGAGTTATTGGACAGAAGGGGAACTCGCACGTACAGTGGATGAAAGTGTGCAACGTATTCAACGCTTACTGCAACCATGCCACCGCTGCTCTGGTCCTTTCTCTGATTGGATCCTCTGCTTTTCTCTTGGGGGTGGTGCACTCTGTTTTCAAACTCCATTACAGGTGA 564 0.4947 MGTQSKPDVDGVHSDVKVVEKPTRTRPYDVLLRFLALSLTLVATIIVAVNKETKTISYAGMQFKATAKWEYMSAIVFFLVSNAIGCSYAAASLAISMVSRTSGNKTAPFLLTVLDLVIMALLFSANGAAAAVGVIGQKGNSHVQWMKVCNVFNAYCNHATAALVLSLIGSSAFLLGVVHSVFKLHYR* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0562 187 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 31 183 IPR006459 -
Lja1g0562 187 PANTHER CASP-LIKE PROTEIN 1E1 9 186 - -
Lja1g0562 187 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 9 186 - -
Lja1g0562 187 Pfam Casparian strip membrane protein domain 26 170 IPR006702 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0562 Lja-Chr1 5102113 5104383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0562 31 164 Miscellaneous Gene Families AT3G16300 22.302 5.83e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0562 - - gmx:100817307 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0562 1 5102113 5104383 Lja1g0562 1 5102113 5104383 ECH