Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0550 ATGCTCCAGCGATACATGTCCCCGTGTTCTTGTGCATTGACCCTTAACCAGAAAGCTGGCACATCTGGAGGGAGAGCTTTGCAATTGTGTTTTGTGAATCAATTGCCTGAAACAATTTTCACTCAGTGCGATATCAAAGCTGAGGGAGGTCTTGCACTTCAAATTGAGCTCCGTGATGCTGCAAACCAGCAACGCGTAGTCAAGGACGAAGGTTCCTCTATGAGGATCAAGATCTGTGTCCTGGATGGTGACTTTGGAAGTGAAGATTGGACTGCAGAGGAATTCAATGCCCAAATTTTGAGTCCGAGAGAGGGAAAAGGACCATTACTTGTTGGAGGCACGATCATTACATTGAAAAATGGAGTTGGTTACATCAGTAAGAAGATTGTGTTTACTGATAACTCCAGCGAAACAAGAAGCAGAAAGTTCCGGTTAGGAGTTAAAATAGTGCAATCTAATTCCTCTAGAACAGACATCAGAGAAGGGAGGAGTGAACCCTTTAAGGTCTTGGATTACAGAGGAAAAGCTAACATGAAATACGGCCGTCCATCATTGAATGACGAGGTATGGCGTCTGAAGAAGATAGCCAGAAATGGTGAACCTTGCAAGCAGCTGTCCTCACATGGAATAAAAACTGTTAAGGATCTTCTGCGGTTGTACATAACCAATCAAGCTTCATTAAGAGAGAAAATAGGCAAGATTCCAGAGAAGTCATGGAATACAATTATTGAACATGCTCAAGATTCTGATAAAGATGATGATGAGCGCTACATTTATCACACAACTGAACAACCAATGTCCCTTGTCCTTAATTGTGTGTATGAGGTTGTGGAGGTGACTTTTGATGGACAAAATTATCGCCCTGTGCAATCTCTGAATTTGGAAGAGAAGCGTTTGGTGGAAAGAGCTAAAAAGCAAGCTAACAACAATTTGAAGGATCTTCATCTGATGCCAGTTGGGACAACAAAACATGGCTCGGGGGAGACATCGCCAGGTGTACAAACTGCACAATATGGTGAACCAGATCATGGTCTGCAACAGTTTGAAATTCCAATTGTTCAGCAAGGCCAACTAGAAGCATTGTCATTCGGTACAACATCACAGAGTGACCTGGTAGGTTTAGATCAGCTGGGAGAAACACCACCATATTGTTCTGCAGGTGGACCATTGAACTCTGGAGCATATACTGATGATGGAAACAGATCCCTCTTCGGTGAAGCACACATTGATGAATTTTCTGATTGCTTTCCTCCCCTTGACCATTGGGAGGAGCATGTAGGTCCTACCTACTTTTCACCTGATGGTAATGTAGGATCTAGCACTTATCAATCTTCTCCAGTAATGAGAGTATGCCAAGCAGAGGAAAGTGCAAGCAAATTTGGCAGAAGATTCGAAATACTTTCCTTGGCAGAAGATTCTAAATGTTTTCAAGTGTGTCGTACTGCATATAGCTAA 1455 0.4275 MLQRYMSPCSCALTLNQKAGTSGGRALQLCFVNQLPETIFTQCDIKAEGGLALQIELRDAANQQRVVKDEGSSMRIKICVLDGDFGSEDWTAEEFNAQILSPREGKGPLLVGGTIITLKNGVGYISKKIVFTDNSSETRSRKFRLGVKIVQSNSSRTDIREGRSEPFKVLDYRGKANMKYGRPSLNDEVWRLKKIARNGEPCKQLSSHGIKTVKDLLRLYITNQASLREKIGKIPEKSWNTIIEHAQDSDKDDDERYIYHTTEQPMSLVLNCVYEVVEVTFDGQNYRPVQSLNLEEKRLVERAKKQANNNLKDLHLMPVGTTKHGSGETSPGVQTAQYGEPDHGLQQFEIPIVQQGQLEALSFGTTSQSDLVGLDQLGETPPYCSAGGPLNSGAYTDDGNRSLFGEAHIDEFSDCFPPLDHWEEHVGPTYFSPDGNVGSSTYQSSPVMRVCQAEESASKFGRRFEILSLAEDSKCFQVCRTAYS* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0550 484 Pfam Calmodulin binding protein central domain 184 248 IPR046830 -
Lja1g0550 484 PANTHER CALMODULIN-BINDING PROTEIN 17 399 - -
Lja1g0550 484 PANTHER OS02G0177800 PROTEIN 17 399 IPR012416 GO:0005516
Lja1g0550 484 Pfam Calmodulin binding protein-like N-terminal domain 27 171 IPR046831 -
Lja1g0550 484 Pfam Calmodulin binding protein C-terminal domain 256 314 IPR046829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0550 Lja-Chr1 5003310 5008554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0550 2 314 Calmodulin-binding Proteins AT5G26920 41.509 6.28e-70 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0550 - - lja:Lj1g3v4777370.1 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0550 1 5003310 5008554 Lja1g0550 1 5003310 5008554 ECH