Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0545 ATGTGGAGCTCGAGCACGAGTACCTGTACGACGATAATGATATGTGTCGGAGCCATGGCTCTGGCATTTCTCTCAACAACAGCTTCAGCAGACGATGTTGTTGCACTCACAGAGGACACATTCGGGAAAGAGGTTGGTCAGGATCGTGGCGCTCTCATCGAGTTTTACGCTCCCTGGTGTGGACATTGTAAAAAGCTTGCACCTGAATATGAAAAACTTGCAACTAGTTTTAGAAAAACCAAGTCCGTTTTGATTGCCAAGGTGGACTGTGATGAACACAAAAGCGTTTGCAATAAATATGGGGTTTCTGGGTACCCCACAATTCAATGGTTTCCTCAGGGATCTCTAGAGCCAAAGAAGTACGAGGGGGCACGAACTGCAGAAGCCCTTACTGCTTTTGTGAACATTGAAGGAGGTACCAATGTCAAGTTTGCTTCTGTTCCATCTAGTGTGGTAGTTCTCTCCTTATTTAACTTTGATAAGGTTGTCTTGGATGAAACAAAAGATGTTTTAGTGGAGTTCTATGCACCGTGGTGTGGTCATTGTCAGGCCCTTGCCCCTACTTATGAAAAGGTTGCTGCAGCATTTAAATTGGAGGAGGATGTAGTTATAGCTAATGTTGATACTGATACTTACAAGGATTTGGCCGAGAAATATGCTGTTAGTGGCTATCCCACACTGAAGTTTTTCCCAAAAAGCAATAAAGCAGGTGAAGATTATGGCGGTGGTCGTGAGTTGGATGATTTTGTAAATTTCATCAACGAGAAATGTGGCACCAATCGTGATGGGAAGGGGCAACTTACTGCTAAAGCTGGTATAATACCATCTCTGGATGACTTGGTGAAGGAGTTTGTAAGTGCTGATGATAATGAGAAGAAGGCAGTGTTTTCCCAGCTTGAGGAGGAAGTTAAGAAGCTTAAGGGTTCTGCTGCAAGATATGGAAACCTATACTTAAAACTTGCTAAGAACAGTATGGAAAAGGGTGCAGACTATGCAAAGAATGAGATTCAACGTCTTGAGCGCTTACTTGAGAAGTCAATCAACCCAGTAAAGGCTGATGAATTCACTCTCAAGAAGAACATCTTATCTACCTTTACTTGA 1101 0.4296 MWSSSTSTCTTIMICVGAMALAFLSTTASADDVVALTEDTFGKEVGQDRGALIEFYAPWCGHCKKLAPEYEKLATSFRKTKSVLIAKVDCDEHKSVCNKYGVSGYPTIQWFPQGSLEPKKYEGARTAEALTAFVNIEGGTNVKFASVPSSVVVLSLFNFDKVVLDETKDVLVEFYAPWCGHCQALAPTYEKVAAAFKLEEDVVIANVDTDTYKDLAEKYAVSGYPTLKFFPKSNKAGEDYGGGRELDDFVNFINEKCGTNRDGKGQLTAKAGIIPSLDDLVKEFVSADDNEKKAVFSQLEEEVKKLKGSAARYGNLYLKLAKNSMEKGADYAKNEIQRLERLLEKSINPVKADEFTLKKNILSTFT* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0545 366 CDD PDI_a_ERp38 32 134 - -
Lja1g0545 366 ProSiteProfiles Thioredoxin domain profile. 24 139 IPR013766 -
Lja1g0545 366 CDD ERp29c 274 365 IPR011679 GO:0005783
Lja1g0545 366 PRINTS Thioredoxin family signature 220 231 - -
Lja1g0545 366 PRINTS Thioredoxin family signature 178 187 - -
Lja1g0545 366 PRINTS Thioredoxin family signature 170 178 - -
Lja1g0545 366 SUPERFAMILY ERP29 C domain-like 271 365 IPR036356 -
Lja1g0545 366 PANTHER PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED 19 365 - -
Lja1g0545 366 SUPERFAMILY Thioredoxin-like 31 135 IPR036249 -
Lja1g0545 366 ProSitePatterns Thioredoxin family active site. 171 189 IPR017937 -
Lja1g0545 366 Coils Coil 322 342 - -
Lja1g0545 366 ProSiteProfiles Thioredoxin domain profile. 145 258 IPR013766 -
Lja1g0545 366 Gene3D Glutaredoxin 144 270 - -
Lja1g0545 366 TIGRFAM pdi_dom: protein disulfide-isomerase domain 158 256 IPR005788 GO:0003756
Lja1g0545 366 TIGRFAM pdi_dom: protein disulfide-isomerase domain 36 135 IPR005788 GO:0003756
Lja1g0545 366 PANTHER PROTEIN DISULFIDE ISOMERASE-LIKE 2-1 19 365 - -
Lja1g0545 366 Pfam Thioredoxin 151 254 IPR013766 -
Lja1g0545 366 Pfam Thioredoxin 33 135 IPR013766 -
Lja1g0545 366 Pfam Endoplasmic reticulum protein ERp29, C-terminal domain 272 365 IPR011679 GO:0005783
Lja1g0545 366 SUPERFAMILY Thioredoxin-like 148 259 IPR036249 -
Lja1g0545 366 ProSitePatterns Thioredoxin family active site. 52 70 IPR017937 -
Lja1g0545 366 Gene3D Glutaredoxin 24 143 - -
Lja1g0545 366 CDD PDI_a_ERp38 158 253 - -
Lja1g0545 366 Gene3D - 271 366 IPR036356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0545 Lja-Chr1 4965808 4968913 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0545 K09584 - gmx:100796355 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0545 1 4965808 4968913 Lja1g0545 1 4965808 4968913 ECH