Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0541 ATGTCCTCTTTACTACGAAGATCGCTTAGGATCACTGTCTCCTCCTTGTTTCATTCCAAACTCGTCGGAGACTCGCATCACGCTCTCGCTTCATCAACCTGGTTCTGGTATCGCCACCTATCACATTCCCTCCCCCACCACCATACCAGTCACTGCTTCAATTCAAATGGGTCTCGCCAAGTTCCTCAGTTTCCATCACTAGTTCGCTATTGGGCTTCTCAACCCGCCACCACAGAACACTACTCAACCTCTGATGGGCTCACGGTCGATGGAATTCTCTCCAACAATTGGACCATTCTGGACGAGAACGACGGCGATTGGAGGAGTCACGCCGCCGCCTTAGCTCAGTCCATTCACTTGATCAAACGCCGCTTACAGTGGACAAAATTGAAGGTTAGGTTGGAAATGTTATCAGCCCAGCTGAACAAGCCAGACCTTTGGGATGATCCTGTGCATGCTGGCAAAATTAGCCGTGAGCACGGTTCGCTCCTTGGGAAAATGAAAGAGGTAAATGCATTGGAGCGAGAGTTGCTTGAGCATATTGAGATGATAAAGCTTGCTCGTGATGAGAATGATGCAGAATTGGAATCGGAATCATTGAAAGCATTGCTTGATATGAGAAGGAATGCAAAAGAAAAGGAGTTAGAGGCATTGTTGGCAGGGGAGCATGATTCTTGTTCTTGCTACATAGAGGTACAGGGTGGGGCTGGGGGTACTGAGAGCATGGACTGGGCTGCAATGGTCATGCAGATGTATAAGTCATGGGCCCAGCGACGTGGATATAAAGTGACTGTAGTGGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACAATCAAAGTAGACGGTGAGTTCGCATTTGGGTATGCCAAAGCAGAAGTAGGAGTGCACAGGCTTGTACGCATATCGCCTTTTGACAGTGCTAAACGCCGACACACTTCATTTGCTGCTGTAGCAGTGATTCCAATCCTTGGCGATGGATCTACACGTGTACAAATTAATGAATCTGATCTCCGAGTTGAACGATTTCGTGCTGGTGGTGCTGGTGGCCAGCATGTGAATACAACTGAGAGTGCTGTTAGAATAGTTCATATTCCTACAGGTGTTACTGCAACTTGTCAGAACGAAAGATCACAACATCAGAATAAGGCTTCGGCAATGGCTGTGCTTCAGTCAAGATTAGACCAACTTGAGATGGCACGTCAGACACAGATGAATGCACAGCATACACAATCTCTCACTGACATAACTTGGGGCAGTCAGATACGTAGTTATGTGCTTCATCCTTACCAAATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGATCCCGACTCTGTTCTTGAGGGAGATCTAGACGGTTTCATATTGAGCTATTTATCAGCTTCTTTGGATAAAAATGAAGGCGATGCTTAA 1425 0.466 MSSLLRRSLRITVSSLFHSKLVGDSHHALASSTWFWYRHLSHSLPHHHTSHCFNSNGSRQVPQFPSLVRYWASQPATTEHYSTSDGLTVDGILSNNWTILDENDGDWRSHAAALAQSIHLIKRRLQWTKLKVRLEMLSAQLNKPDLWDDPVHAGKISREHGSLLGKMKEVNALERELLEHIEMIKLARDENDAELESESLKALLDMRRNAKEKELEALLAGEHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEVGVHRLVRISPFDSAKRRHTSFAAVAVIPILGDGSTRVQINESDLRVERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQTQMNAQHTQSLTDITWGSQIRSYVLHPYQMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKNEGDA* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0541 474 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 92 471 - -
Lja1g0541 474 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 92 471 - -
Lja1g0541 474 SUPERFAMILY Release factor 130 466 IPR045853 -
Lja1g0541 474 Pfam RF-1 domain 332 439 IPR000352 GO:0003747|GO:0006415
Lja1g0541 474 Hamap Peptide chain release factor 2 [prfB]. 103 467 IPR004374 GO:0005737|GO:0006415|GO:0016149
Lja1g0541 474 SMART PCRF_a_2 185 295 IPR005139 GO:0006415
Lja1g0541 474 Coils Coil 170 190 - -
Lja1g0541 474 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 346 362 IPR000352 GO:0003747|GO:0006415
Lja1g0541 474 Pfam PCRF domain 131 320 IPR005139 GO:0006415
Lja1g0541 474 Coils Coil 389 409 - -
Lja1g0541 474 Gene3D Release factor 106 216 - -
Lja1g0541 474 TIGRFAM prfB: peptide chain release factor 2 108 465 IPR004374 GO:0005737|GO:0006415|GO:0016149
Lja1g0541 474 Gene3D - 230 459 - -
Lja1g0541 474 Gene3D - 326 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0541 Lja-Chr1 4946993 4950290 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0541 K02836 - gmx:100797427 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0541 1 4946993 4950290 Lja1g0541 1 4946993 4950290 ECH