Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0538 ATGGCATTTCAAACAACTCACTCTCGTCTATCATCCCCAACCACCGCAACCAACTTCTTCTTCTCCGCCTCCTCCCCCTCCCCCAATCTCAGATCACTGAAACCTACTTCGCTTCCATCTCGATTCTTCCATTGCCGATCGAAACGCCTCGTTTTCACGCCGAGACTTATCACGAGAGCTTGCGCGGTGAAGGTCGAGGAGAAGGACGTTGCTGGAAAATCAGGAGAATGGGGGAGGGTTTCTGCTGTGTTGTTTGACATGGATGGTGTGCTCTGCAACAGTGAAGAGCCTTCTAGAAGAGCCGGTGTCGATGTTTTCGCTGAGATTGGCGTCCAGGTCACCGTCGATGATTTTGTGCCGTTCATGGGAACTGGAGAAGCGAACTTTTTGGGAGGTGTAGCCTCTGTTAAGGGAGTTAAAGGATTTGATCCTGAAGCTGCAAAAAAGAGGTTCTTTGAAATATATTTAGAGAAGTATGCAAAACCAGATTCTGGAATAGGATTTCCAGGTGCCCTTGAACTCATCTCTCAGTGTAAAAGCAAAGGACTTAAAGTTGCTGTTGCATCTAGTGCTGATCGTATCAAGGTTGATGCAAATCTAGCTGCTGCTGGTTTGCCATTGTCATTGTTTGATGCGATTGTGTCTGCAGATGCTTTTGAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCATCAAGAATATTGAATGTGCCTCCTAGTGAGTGTATCGTTATAGAAGACGCACTAGCTGGAGTTCAAGCTGCCAAAGCTGCACAAATGAGATGTATAGCTGTAAGGACTACATTATCAGATGAGGCTTTGGAACCTGCTGGTCCAACTTTTATCCGAGATGACATAGGAAGTGTTTCTCTTGATGAAATTCTTAATGGTGGCTCTGATGGATATAATAAGAGGATGCAGGGCTCACAAAGTCTAAATAATTTTGCACAAACTTCAACTACTATGCTTGCGGGAAAAACAGATGATGGAGTTGAAAAATCTTCCAATGGTACTGATGAGGGAATTTTCACAACTACAGGGTTGCAGGGTTCGCGGCGAGATATACTGAGATTTGGAAGTCTGGGCATCGCTATCTCTTGCCTTGTCTTCACCGTAAGTAACTGGAAGGCAATGCAATACACTTCCCCTAAAGCGGTTTGGAATCTCTTGTTTGGTGTTACCCAGCCACCCTTGGGACAGAAAGAAGGTAACTCACGATCTGATAGGATCCAGCAATTTGTGAACTACATAGCTGATCTAGAAAGCAGGGGAAACACTCAGGTTGTTCCAGAATTTCCATCTAAACTTGATTGGCTAAATACAGCCCCGCTCCAGTTTCGTAGGGACCTGAAAGGAAAAGTTGTTCTGCTTGATTTCTGGACTTATTGTTGTATAAACTGTATGCATGTCTTACCAGACCTAGATTTTCTGGAGAAAAAGTACAAAAATATGCCGTTCCTTGTTGTGGGTGTTCATTCTGCCAAGTTTGATAATGAGAAAGATTCTGAAGCGATTCGCAATGCAGTTCTGCGCTATGATATCACTCACCCTGTTGTCAATGATGGAGACATGTACCTTTGGCAGAAGTTGGGCATAAGTTCATGGCCAACATTTGCTATCATTGGCCCCAATGGTAAGCTCCTTGCACAACTTGCAGGAGAAGGTCGCAAAAAGGATCTTGATGATTTTGTGGAAGCAGCACTTCTGTTTTATGGAAAGCAGAACATGTTGGACGATACACCAATTACATTAAGTTTAGAGAAAGATAATGATCCTCGCCTATTAACATCTCCATTGAAGTTTCCTGGAAAGTTAGCAATTGATGTCCTCAACAACAGGCTTTTTATTTCTGACAGCAACCATAACCGCATAGTTGTTACTGACCTAAATGGGAATTTTATTGTACAAATTGGGAGCAGTGGGGAGGAAGGTCTGCAGGACGGTTCCTTTGATGATGCCACCTTCAACCGCCCTCAGGGCCTTGCTTATAATGCAAAGAAAAATATTCTCTATGTTGCAGACACCGAAAACCATGCTTTGAGGGAAATTGATTTTGTTAATGATAAAGTGCGCACTCTTGCTGGAAATGGGACCAAGGGCTCTGATTATATTGGAGGAGGAAAAGGAGACACTCAGCTCCTCAATTCCCCTTGGGATGTCTGCTTTCATCCACTTGAAGAGAAGATTTATATTGCCATGGCTGGCCAACACCAGATTTGGGAGCACAATATATTGAATGGAATTACAAGAGCATTTAGTGGTGATGGCTATGAAAGAAATTTAAATGGATCAAGTTCTACAAGCACATCATTTGCACAACCTTCTGGTCTTTCATTGTCTCGAGATCTAACGGAGATCTACGTCGCTGATAGTGAGAGTAGTTCAATTCGAGCTGTTGATCTAAAAACAGGAGGATCACGGTTGTTAGCTGGTGGTGACCCTGTCTTCTCAGACAATTTGTTTAAGTTTGGCGATCAAGATGGAATAGGCTCTGAAGTACTTCTTCAACATCCGCTGGGGGTTTTATGTGGAAAGGATGGTGAAATTTACATCACAGATAGCTACAATCACAAGATCAAGAAGTTTGATCCAACTAGTAAAAGAGTTAGCACCATTGCAGGGACAGGAAAAGCTGGTTTCAGGGATGGAACAGCTGTAACAGCTCAGCTTTCTGAACCATCAGGCATTATTGAAGGGAACAGCGGGAGACTATTCATAGCTGATACAAACAACAGCATAATTCGATATCTAGATTTGAATACTGATGAATTTGAACTCCATACCTTGGAGCTTAAAGGATTTCAGCCTCCTAAACCAAAATCAAGATCTTTTAAACGTCTCAGGAGACGTCCCTCAGCCGACACTGTGCCAATCACCATTGATGCCATTTCATCAGAGGAGGGAAACTTGTCTATAGACATATCATTGCCAAATGAGTATCATTTCTCAAAGGAAGCACGCAGTAGATTCAGTGTTGATATTGAATCTGAAGGCTCTGTTGATATTGATCCCCTGGATGGACTCCTTAGTCCAGAAGGATCTGCAACCCTTCACTTTAAGAGATCCTCCACCTCTGCTGCTGTTGGAAGAATTAATTGCAAGATTTACTATTGCAAGGAAGATGCGGTTTGTTTGTACCAATCCTTGCTGTTTGAGGTCCCCTTCAGAGAGGGAGTTTCTGACTCTACTAGAGCAAACGTCACTCTTGCTCATCTTGTCAAGCCCAAAACTTCAGCCAGCAGCTTACTGCAACCAGTTTCCCCGTGA 3270 0.4327 MAFQTTHSRLSSPTTATNFFFSASSPSPNLRSLKPTSLPSRFFHCRSKRLVFTPRLITRACAVKVEEKDVAGKSGEWGRVSAVLFDMDGVLCNSEEPSRRAGVDVFAEIGVQVTVDDFVPFMGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLEKYAKPDSGIGFPGALELISQCKSKGLKVAVASSADRIKVDANLAAAGLPLSLFDAIVSADAFENLKPAPDIFLAASRILNVPPSECIVIEDALAGVQAAKAAQMRCIAVRTTLSDEALEPAGPTFIRDDIGSVSLDEILNGGSDGYNKRMQGSQSLNNFAQTSTTMLAGKTDDGVEKSSNGTDEGIFTTTGLQGSRRDILRFGSLGIAISCLVFTVSNWKAMQYTSPKAVWNLLFGVTQPPLGQKEGNSRSDRIQQFVNYIADLESRGNTQVVPEFPSKLDWLNTAPLQFRRDLKGKVVLLDFWTYCCINCMHVLPDLDFLEKKYKNMPFLVVGVHSAKFDNEKDSEAIRNAVLRYDITHPVVNDGDMYLWQKLGISSWPTFAIIGPNGKLLAQLAGEGRKKDLDDFVEAALLFYGKQNMLDDTPITLSLEKDNDPRLLTSPLKFPGKLAIDVLNNRLFISDSNHNRIVVTDLNGNFIVQIGSSGEEGLQDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVNDKVRTLAGNGTKGSDYIGGGKGDTQLLNSPWDVCFHPLEEKIYIAMAGQHQIWEHNILNGITRAFSGDGYERNLNGSSSTSTSFAQPSGLSLSRDLTEIYVADSESSSIRAVDLKTGGSRLLAGGDPVFSDNLFKFGDQDGIGSEVLLQHPLGVLCGKDGEIYITDSYNHKIKKFDPTSKRVSTIAGTGKAGFRDGTAVTAQLSEPSGIIEGNSGRLFIADTNNSIIRYLDLNTDEFELHTLELKGFQPPKPKSRSFKRLRRRPSADTVPITIDAISSEEGNLSIDISLPNEYHFSKEARSRFSVDIESEGSVDIDPLDGLLSPEGSATLHFKRSSTSAAVGRINCKIYYCKEDAVCLYQSLLFEVPFREGVSDSTRANVTLAHLVKPKTSASSLLQPVSP* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0538 1089 Gene3D - 82 274 IPR023214 -
Lja1g0538 1089 Pfam Thioredoxin-like 453 547 IPR012336 -
Lja1g0538 1089 CDD HAD_BPGM-like 82 268 - -
Lja1g0538 1089 Pfam Haloacid dehalogenase-like hydrolase 83 266 IPR041492 -
Lja1g0538 1089 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 80 289 - -
Lja1g0538 1089 SUPERFAMILY NHL repeat 594 923 - -
Lja1g0538 1089 CDD NHL-2_like 638 979 IPR045302 -
Lja1g0538 1089 Gene3D Putative phosphatase; domain 2 93 164 IPR023198 -
Lja1g0538 1089 Pfam NHL repeat 837 863 IPR001258 GO:0005515
Lja1g0538 1089 Pfam NHL repeat 656 681 IPR001258 GO:0005515
Lja1g0538 1089 Gene3D - 817 918 IPR011042 -
Lja1g0538 1089 Gene3D - 579 742 IPR011042 -
Lja1g0538 1089 SUPERFAMILY Thioredoxin-like 428 566 IPR036249 -
Lja1g0538 1089 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 178 191 IPR006439 -
Lja1g0538 1089 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 210 226 IPR006439 -
Lja1g0538 1089 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 80 91 IPR006439 -
Lja1g0538 1089 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 228 248 IPR006439 -
Lja1g0538 1089 ProSiteProfiles NHL repeat profile. 836 866 IPR001258 GO:0005515
Lja1g0538 1089 ProSiteProfiles Thioredoxin domain profile. 424 570 IPR013766 -
Lja1g0538 1089 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 186 1085 - -
Lja1g0538 1089 SUPERFAMILY HAD-like 78 292 IPR036412 -
Lja1g0538 1089 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 80 289 - -
Lja1g0538 1089 Gene3D Glutaredoxin 401 571 - -
Lja1g0538 1089 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 207 266 IPR006439 -
Lja1g0538 1089 SMART LY_2 593 635 IPR000033 -
Lja1g0538 1089 SMART LY_2 765 807 IPR000033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0538 Lja-Chr1 4906859 4927034 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0538 - - gmx:100795843 1863.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0538 1 4906859 4927034 Lja1g0538 1 4906859 4927034 ECH