Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0535 ATGGCAGACTTGGAAAACATGCTTCTCGAGGCAGCTGGGAGGACCAGTTCTCCGGTGAGAAACCGCCAAAAGCTTGGAAAGTCAAGAATGAAAGACGGTGCGGCATTCTCTGATGGTGGAAGTAATTCCAGAGAGGAAGACTCTGATGATGGTGCTGGTGCTGTAAGCAAGAAACCACCAAGATGTGCATCTCATGTTCCATTGAAGAAGAGGTTGGACCTCAGCAGAAGAGGTAGTGTTGTATTTGATGATCTTTACAAAAATGAAGATGACAAGCAGAGGCTTGCAAAGATGACTGAACTTGAAAGAGAGATGATTTTGTCTGATAGAGCATCTAGAAAAGGTGAAAAGGAACTTAAGGAGAAAATAAAACTGAGGAGGGACAGCAATAATGCAACGGCAAAGACTACTACTACTAGATCACCTGTTGTCTCATCTGCTAAGGTTCGTTCATCAGCTAGAAATGCTGAGAGGACAGCTGCAAAGGACGATGTTCTAAGCGAATTGCGTGCGAAAAGGATGAAGCATCAGATCCTAGACACTCATGGTAAATCAGGCAATGCATCAGGAACAGTCTCAAGCAGCAAGGGAGTGAAGCCGAAACCCGAAAGCAGCTCGAGTCAGAGCGAGAGTGCCATGAGGTCTGACAGTGAAAGAGAATCTTCTGATGATGGCGGATTGGCTGACAGCGATGATGACAAGAACATGCTTGAATCAGACATGCCAACATTTGAGAATGTTAAGGAAGTCACCGTCAGGAGGTCAAGGCTTGTGAAGTGGATGAATGAGCCGTTTTTCGAGGAGCTAATTGTTGGTTGTTTTGTGAGAATTGGCATAGGAAGATCAGACAGTGGACCTGTTTACAGGCTCAGCATGGTGCAGAGAGTTGAATTGGGTGACCCTGCTAGACCTTACAAGGTGGAAAATAAAGTCACTCATAAGTATCTGGTTTGTGTTTGGGGCAGTGAAAAATCAGCTGCAAAATTTCAGATGAGTGTAGTTTCAGAATCATCACCATTAGAGAAAGAGTTCAGACAGTGGCGAAGAGAAATTGAGAGAACTTGCAGCCTCATGCCTAGTAAGGTGAGCATATTGGAGAAGAAGGAGGCCATAAGAAGAACCAACACATATATTTACTCTGCAGCCACTGTGAAGCAGATGCTGGAGGAGAAAAAATCTGCTACATCAAGGCCACTGAACATTGCAGTGGAGAAGGATCGTTTGAAGACGGAGTTAGAAGTAGCAAAATGCAAGAACGATCAGGTAGAGATGGATAGGATCTTCGCAAAGCTTGCGGAATTGGAAGCATCGCGTCAAGCTCGGGAGAATGATTCAAAAGCAAAGAGGCTGGCTGAAATGAACAGGAAGAACAGGTTTGAGAACTTCAAAAGCTTGGCTGAGCATAGACATATGAATGCAAATTTAAAAGCTGGAGAAGGGGGGAAGGAAGGAGAACCTGTTACTGCAACTGTTGGTGTTGAAGACACAAAAGAAGCATTGCAAGCTGCTGCTAAGGCTGGGAAGTTGGTTGATACCTTTGCTCCAGTGGATGGGGGAACAGAATCACACACACTGCATGATTTTGACTTGGAAATTTCATTGGCTGAGCTTAAGAATTTTGGTGGAGCACAGGGGCTAAAGAATGCGTTTTTGGCAAGGAAACAGAAAATAGAAGCAACAATTGGTTGCCAGGTTCCTGAGAACGATGGGAGTAGGCATGCTCTTACATTAACTATCAGTGACTACAAGAGAAGAAGAGGGCTTCTGTGA 1770 0.4463 MADLENMLLEAAGRTSSPVRNRQKLGKSRMKDGAAFSDGGSNSREEDSDDGAGAVSKKPPRCASHVPLKKRLDLSRRGSVVFDDLYKNEDDKQRLAKMTELEREMILSDRASRKGEKELKEKIKLRRDSNNATAKTTTTRSPVVSSAKVRSSARNAERTAAKDDVLSELRAKRMKHQILDTHGKSGNASGTVSSSKGVKPKPESSSSQSESAMRSDSERESSDDGGLADSDDDKNMLESDMPTFENVKEVTVRRSRLVKWMNEPFFEELIVGCFVRIGIGRSDSGPVYRLSMVQRVELGDPARPYKVENKVTHKYLVCVWGSEKSAAKFQMSVVSESSPLEKEFRQWRREIERTCSLMPSKVSILEKKEAIRRTNTYIYSAATVKQMLEEKKSATSRPLNIAVEKDRLKTELEVAKCKNDQVEMDRIFAKLAELEASRQARENDSKAKRLAEMNRKNRFENFKSLAEHRHMNANLKAGEGGKEGEPVTATVGVEDTKEALQAAAKAGKLVDTFAPVDGGTESHTLHDFDLEISLAELKNFGGAQGLKNAFLARKQKIEATIGCQVPENDGSRHALTLTISDYKRRRGLL* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0535 589 MobiDBLite consensus disorder prediction 155 180 - -
Lja1g0535 589 MobiDBLite consensus disorder prediction 213 239 - -
Lja1g0535 589 MobiDBLite consensus disorder prediction 108 242 - -
Lja1g0535 589 SUPERFAMILY Plus3-like 243 372 IPR036128 GO:0003677
Lja1g0535 589 Pfam Plus-3 domain 246 351 IPR004343 GO:0003677
Lja1g0535 589 PANTHER UNCHARACTERIZED 81 482 - -
Lja1g0535 589 MobiDBLite consensus disorder prediction 108 129 - -
Lja1g0535 589 MobiDBLite consensus disorder prediction 1 69 - -
Lja1g0535 589 PANTHER UNCHARACTERIZED 483 589 - -
Lja1g0535 589 PANTHER UNCHARACTERIZED 1 79 - -
Lja1g0535 589 MobiDBLite consensus disorder prediction 130 153 - -
Lja1g0535 589 Coils Coil 405 425 - -
Lja1g0535 589 MobiDBLite consensus disorder prediction 182 212 - -
Lja1g0535 589 SMART rtf1 241 353 IPR004343 GO:0003677
Lja1g0535 589 PANTHER PLUS-3 DOMAIN PROTEIN 1 79 - -
Lja1g0535 589 ProSiteProfiles Plus3 domain profile. 241 376 IPR004343 GO:0003677
Lja1g0535 589 Gene3D - 241 374 IPR036128 GO:0003677
Lja1g0535 589 PANTHER PLUS-3 DOMAIN PROTEIN 483 589 - -
Lja1g0535 589 PANTHER PLUS-3 DOMAIN PROTEIN 81 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0535 Lja-Chr1 4891145 4893581 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0535 K15178 - gmx:100793188 749.969