Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0522 ATGGGGACTGAAAATCCCGGTCGTCCAACCTTCCCTGCAAGACCTGTTTCCTCACCATTCGCTGCAGCTCCTGCACCACAGACTGTAACACCTTTTGCCTCCATGCCTGGATCAGACCCTCCTCCTCCTTTTCGACCTACGCCTCCGGCTCCACCGCAAGCATCCTCGCCGTTTTCATCGTTTGGACCGCCGGTTAGACCTGGGGCACCGAGTTTTAGACCTGCCCCGCCTGGTAGATTCAATGACCCATCCGTGCCTCCACCTCCTCCTCCCCAATCATCCAATTTCCTTCCTGCTGGAAATTTCCAGCAATTCTCAGCACCACAATTTCCCCCTGCGCAGCCGCGTGGTCCTCCGCCAATGATGGGACAGCCACAGCCATCGTTTCAACCTCCTCCTGCCGTTCAAACACAGTCTTTTCCTGCATCTTTTCCACCTCAGCCGCAGATGCCTCATGTCCCGATGGGGTCGCCGCCTCCTCCGCCAAGTGCCACCACACCTGGGCCTTTGGGGACAAATGTTCCTCCCACAGCATATCAGCCATCTTTTCCTGGATACGCCCGTATGCAGCCCGGTGCTGAAATTCAACCTCCGCCCATGCATTCTGCTAATCAAGGAAATTATGGACCTGTGCCGCCTGCGCAGTCTTCTCCCTTTGCACCTAACCAAGGAGGCTATGTTCAGCAACCCCCGGTGGCTGCTCCGTTAGGAATGCAGCACATGCCGCCGCCAGGTTCTGCATCTTCCATTCAAGGCTTGACAGAAGATTTCAGTTCACTCGCTGTGCAAACTCGTCCGGGAACGATCGATCAGGTGTTTGATGCTAAAGAACTTCCAAGGCCGTTGGATGGGGATGTGGAGCCAAACAATTTGGCCGAGATGTATCCAATGAACTGCAATCCTAGATATCTACGCCTCACAACCGGTGCACTTCCTAGCTCACAGTCCTTAGCTTCTAGGTGGCATCTGCCTCTTGGAGCAGTTGTGTGTCCGCTTGCAGAATCTCCTGATGGGGAAGAGGTGCCTACAGTTAACTTTGCACCGGCTAGTGTTGTACGATGTAGAAGATGCCGCACATATGTGAATCCTTATGTGACATTTACAGAAGCTGGAAGAAAATTCCGGTGCAATGTATGCACCTTGCTTAATGATGTTCCTAGTGAATACTATGCACAATTAGATGCAACTGGCAGAAGAGTTGATTTGAATCAACGACCCGAGCTTACGCAGGGTACTGTAGAATTTGTTGCCCCTACTGAGTATATGGTGCGGCCTCCTATGCCCCCAGTATATTTCTTCCTGATCGATGTTTCCATATCTGCGGTTAAAAGTGGCATGATTGAGGTTGTGGCTGAAACAATCAAGTCATGCTTAGATGAGCTGCCTGGCTTTCCACGAACTCAAATAGGGTTTGCAACTTTTGACAGCACTATACATTTTTATAATATGAAGTCATCATTGACTCAACCACAGATGTTGGTGGTCTCAGATCTGGATGACATATTTGTTCCACTGCCAGATGATCTTCTTGTTAACTTATCTGAATCAAGAAGCGTGGTGGATGCCTTCCTAGATAGTTTGCCAACTATGTTCCAGGACAATGTTAATCTGGAATCAGCTTTTGGTCCTGCTCTGAAGGCTGCATTTATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATTTTTCAAAATACACTTCCATCTCTTGGTATTGGTCGTTTAAGGTTACGTGGAGATGATACTCGTGTATATGGAACAGACAAAGAACATGGACTGAGACTGCCTGAAGATCCATTTTATAAGCAAATGGCTGCTGAGTTTTCTAAGCTTCAAATCTCAGTGAATGTGTATGCCTTCAGTGATAAGTACACTGACATAGCATCCTTAGGAACTCTGGCGAAGTATACTGCTGGTCAAGTGTATTACTATCCAGCTTTCCAATCAGCCATTCATGGGGAGAAATTGAGACATGAATTAAGGAGAGATCTTATTAGAGAAACTGCATGGGAAGCTGTAATGCGTATTAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAATTTCATGCTAAGGTCCACTGATTTGTTAGCACTTCCGGCCGTAGATTGTGATAAAGCCTTTGCCATGCAGCTATCACTTGAGGAGACATTACTGACAACCCAGACGATGTATTTCCAAGTTGCATTGCTATACACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACACACGATGGCAGTGCCAGTTGTTACAGACCTGGCTGATCTCTATCGCCTGGCTGATACTGGTGCAATTGTATCTCTTTTTAGTAGGCTAGCAATTGAGAAAACATTGTCCCAAAAATTGGAAGATGCACGGAGTGCTGTGCAACAGAAAATTGTGAAAGGCCTCAAGGAATATCGAAATCTTTATGCTGTGCAACATCGCTTGGCCAACAGGATGATATATCCCGAGTCTTTAAAGTTCTTAATGTTGTATGGATTAGCTCTTTGTAAATCAATGGCTCTACGTGGAGGGTTTGGGGATGTTCCACTGGATGAGCGTTGTGCAGCAGGACATACAATAATGACTCTACCAATAAAAAGATTGTTGAAACTTCTCTATCCTAGCTTGATTCGGGTTGATGAATATCTTCTAAAGGCATCTGTACAGGCGGATGACTTGAAAAGTATTGAGAGAAGGTTACCTTTGACTGGGGAGAGCTTAGACTATAGGGGCCTTTATATATACGATGATGGCTTCCGGTTCATTTTATGGTTTGGTAAGGTGATTTCCCCTGATATAGCCAAGAATTTACTTGGAGCAGACTTTGCGGCAGAATTATCAAAGGCTACTCTAATTGAGCATAACAATGAAATGTCAAGGAGGCTGATGAAGGTTCTCGAAAAATTGAGAAATACAGACCGTGCATATTACCAGTTGTGCCACCTGGTGAGGCAAGGTGAACAACCCAAAGAAGGGTTCCTCCTTCTAGCGAACCTTGTTGAGGACCAGATGGGTGGTAACAGCGGGTATGCTGATTGGATGCTACAGATATCCCGACAAGTGCAACACACATAG 3066 0.4651 MGTENPGRPTFPARPVSSPFAAAPAPQTVTPFASMPGSDPPPPFRPTPPAPPQASSPFSSFGPPVRPGAPSFRPAPPGRFNDPSVPPPPPPQSSNFLPAGNFQQFSAPQFPPAQPRGPPPMMGQPQPSFQPPPAVQTQSFPASFPPQPQMPHVPMGSPPPPPSATTPGPLGTNVPPTAYQPSFPGYARMQPGAEIQPPPMHSANQGNYGPVPPAQSSPFAPNQGGYVQQPPVAAPLGMQHMPPPGSASSIQGLTEDFSSLAVQTRPGTIDQVFDAKELPRPLDGDVEPNNLAEMYPMNCNPRYLRLTTGALPSSQSLASRWHLPLGAVVCPLAESPDGEEVPTVNFAPASVVRCRRCRTYVNPYVTFTEAGRKFRCNVCTLLNDVPSEYYAQLDATGRRVDLNQRPELTQGTVEFVAPTEYMVRPPMPPVYFFLIDVSISAVKSGMIEVVAETIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVDAFLDSLPTMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGIGRLRLRGDDTRVYGTDKEHGLRLPEDPFYKQMAAEFSKLQISVNVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLRHELRRDLIRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRVHTMAVPVVTDLADLYRLADTGAIVSLFSRLAIEKTLSQKLEDARSAVQQKIVKGLKEYRNLYAVQHRLANRMIYPESLKFLMLYGLALCKSMALRGGFGDVPLDERCAAGHTIMTLPIKRLLKLLYPSLIRVDEYLLKASVQADDLKSIERRLPLTGESLDYRGLYIYDDGFRFILWFGKVISPDIAKNLLGADFAAELSKATLIEHNNEMSRRLMKVLEKLRNTDRAYYQLCHLVRQGEQPKEGFLLLANLVEDQMGGNSGYADWMLQISRQVQHT* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0522 1021 SUPERFAMILY Zn-finger domain of Sec23/24 342 425 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lja1g0522 1021 MobiDBLite consensus disorder prediction 111 134 - -
Lja1g0522 1021 Gene3D von Willebrand factor, type A domain 428 665 IPR036465 -
Lja1g0522 1021 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 880 1019 IPR036180 -
Lja1g0522 1021 Pfam Sec23/Sec24 beta-sandwich domain 668 752 IPR012990 -
Lja1g0522 1021 Pfam Sec23/Sec24 zinc finger 352 389 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lja1g0522 1021 Gene3D Sec23/Sec24 helical domain 752 1018 - -
Lja1g0522 1021 MobiDBLite consensus disorder prediction 96 110 - -
Lja1g0522 1021 SUPERFAMILY Helical domain of Sec23/24 763 870 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lja1g0522 1021 MobiDBLite consensus disorder prediction 1 230 - -
Lja1g0522 1021 PANTHER OS04G0129500 PROTEIN 37 1020 - -
Lja1g0522 1021 MobiDBLite consensus disorder prediction 35 95 - -
Lja1g0522 1021 CDD Sec24-like 426 667 IPR041742 GO:0006886|GO:0006888|GO:0030127
Lja1g0522 1021 MobiDBLite consensus disorder prediction 200 224 - -
Lja1g0522 1021 SUPERFAMILY beta-sandwich domain of Sec23/24 187 761 - -
Lja1g0522 1021 Gene3D Severin 871 999 IPR029006 -
Lja1g0522 1021 Pfam Sec23/Sec24 helical domain 763 866 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lja1g0522 1021 Pfam Sec23/Sec24 trunk domain 426 662 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lja1g0522 1021 Gene3D - 299 751 - -
Lja1g0522 1021 SUPERFAMILY vWA-like 426 654 IPR036465 -
Lja1g0522 1021 MobiDBLite consensus disorder prediction 144 169 - -
Lja1g0522 1021 Gene3D - 298 410 - -
Lja1g0522 1021 PANTHER SEC24-RELATED PROTEIN 37 1020 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0522 Lja-Chr1 4742758 4751471 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0522 K14007 - gmx:100791083 1579.69