Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0506 ATGAAACTTCGCTTGCCACTGTTACAGTTTGTTAGCCATGGAAATCCAGCTCCTAAATTCTACTCAGCTGCACCAAACAACGTGGTCACTTGGACCACCCTCATCACCCAACTCTCTCGTTCCAACAAACCATTCCATGCCCTGAACTCTTTCAACCGCATGAGAGCCGCCGGAATATACCCCAACCACTTCACCTTCTCAGCCATCTTACCCGCATGTGCCAATACCCTGATCCTCATCCACGGTCAGCAAATGCACGCATTGATTCATAAACACTGCTTCGACACGGATACATTTGTAGCCACCGCGTTACTTGACATGTACGCTAAATGTTGTCACATGTTATTTGCAGTGAAGGTGTTCGATGAAATGCCCCACAGGAGTCTCGTTTCCTGGAACGCGATGATTGTGGGGTTCTTGAGAAACAAGTTGTATGTCCGTGCCATTGGGATTTTCAGGGAGGTTCTCCGAGATGCTGCCCTTGACCCGGATGAAGTCAGTTTCTCGAGCGTGTTGAGTGCTTGTGCAAGTGTCGTTGACTTGGGGTTTGGGATGCAGGTGCATGGGAACATCGTGAAGCGTGGTTTGATCGTGTTGGTTTATGTGAACAACTCGCTTGTGGACATGTATTGCAAGTGTGGGTCGTTTGATGCGGCAAACAAGCTGTTCGACGCTGCTGGAGATAGAGATATTGTTACCTGGAATGTGATGATCGTGGGGTGCGGACGTAGCGAAAACTTTGAACAAGCTTGGAGCTTTTTCCGGGCCATGAAAAGGGAAGGTGTGGTGCCCGACGAGGCCTCGTGCTCATCCCTTCTTCATGCTTCTGCAAGTGTTGCGGTGTTGGCACAGGGCACCTTGATCCATAACCATGTCTTAAAAACTGGGTACTTGAAAAACGCTTGTGTTTTGAGTTCATTGGTGACAATGTATGGCAAATGTGGGAACTTGTTTGATGCTTATCGGGTTTTTCAAGAAATAGAGAACTGTAATGTGGTTTGTTGGACAGCAATGATTGCAGTTTGTCACCAACATGGCTGCGCAAATGAAGCGATTGAGTTATTTGAAGAGATGCTCAGAGAGGGGGTTGTGCCAGAATACATTACATTTGTTTCTGTGCTGTCAGCATGCAGCCATACAGGCCTGGTAGATGATGGTTTTAAGTACTTCAATTCCATGGTTAGCGTCCATAATATTAAACCTGGACCAGAACATTATGCATGCATGGTTGATTTGCTTGGTCGTGTCGGTCGATTGGAGGAAGCATGCAACTTTATTGAATCGATGCCAATCAAGCCTGACTCCTCAGTTTGGGGGGCTTTGCTGGGGGCATGTGGAAAATATGCTGATGTTGAAATGGGAAGAAAGGTTGCTGAGAGGCTTTTCAAGTTGGAACCGGATAATCCAGGAAATTATAGGCTACTTTCAAATATCTATACACGGCATGGAATGTTGGAAAAGGCTGATGAAGTGAGGCAATTGATGGGGATTAATAGGGTAAGGAAAGAGACTGGATGTAGCTGGATTGATGTTAAGGACAGGACCTTTGTGTTCACTGTGAATGATAGGTCACATTCAAGGACAGATGAGATTCATGAAATGTTGCAGAAGTTGAAGGAGTTGATAAAGAAGAGAGGATATGTGGCTGAGACTCAGTTTGCAACAAACATTGTAGAAGGGACTGAAGAGCAGAGTTTGTGGTATCACAGCGAGAAGTTAGCTCTTGCATTTGGTCTTCTGGTCCTCCCAGTTGGATCTCCAGTAAGGATAAAGAAGAATTTGAGGACTTGTGGCGATTGTCACACTGTTATGAAGTTTGCTTCAGAGATTTTTAAGAGAGAGATTATTGTAAGAGATATCAACAGGTTTCACCGATTCACAAATGGGCTGTGCTCTTGTAGAGACTATTGGTGA 1914 0.4545 MKLRLPLLQFVSHGNPAPKFYSAAPNNVVTWTTLITQLSRSNKPFHALNSFNRMRAAGIYPNHFTFSAILPACANTLILIHGQQMHALIHKHCFDTDTFVATALLDMYAKCCHMLFAVKVFDEMPHRSLVSWNAMIVGFLRNKLYVRAIGIFREVLRDAALDPDEVSFSSVLSACASVVDLGFGMQVHGNIVKRGLIVLVYVNNSLVDMYCKCGSFDAANKLFDAAGDRDIVTWNVMIVGCGRSENFEQAWSFFRAMKREGVVPDEASCSSLLHASASVAVLAQGTLIHNHVLKTGYLKNACVLSSLVTMYGKCGNLFDAYRVFQEIENCNVVCWTAMIAVCHQHGCANEAIELFEEMLREGVVPEYITFVSVLSACSHTGLVDDGFKYFNSMVSVHNIKPGPEHYACMVDLLGRVGRLEEACNFIESMPIKPDSSVWGALLGACGKYADVEMGRKVAERLFKLEPDNPGNYRLLSNIYTRHGMLEKADEVRQLMGINRVRKETGCSWIDVKDRTFVFTVNDRSHSRTDEIHEMLQKLKELIKKRGYVAETQFATNIVEGTEEQSLWYHSEKLALAFGLLVLPVGSPVRIKKNLRTCGDCHTVMKFASEIFKREIIVRDINRFHRFTNGLCSCRDYW* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0506 637 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Lja1g0506 637 TIGRFAM PPR: pentatricopeptide repeat domain 333 365 IPR002885 -
Lja1g0506 637 TIGRFAM PPR: pentatricopeptide repeat domain 232 266 IPR002885 -
Lja1g0506 637 TIGRFAM PPR: pentatricopeptide repeat domain 29 62 IPR002885 -
Lja1g0506 637 Pfam E motif 448 510 IPR046848 -
Lja1g0506 637 PANTHER OS07G0578800 PROTEIN-RELATED 23 630 IPR045215 GO:0003723|GO:0009451
Lja1g0506 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 27 61 IPR002885 -
Lja1g0506 637 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 23 630 - -
Lja1g0506 637 Pfam PPR repeat family 230 275 IPR002885 -
Lja1g0506 637 Pfam PPR repeat family 27 75 IPR002885 -
Lja1g0506 637 Pfam PPR repeat family 331 378 IPR002885 -
Lja1g0506 637 SUPERFAMILY TPR-like 295 490 IPR011990 GO:0005515
Lja1g0506 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Lja1g0506 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Lja1g0506 637 Pfam PPR repeat 204 224 IPR002885 -
Lja1g0506 637 Pfam PPR repeat 130 157 IPR002885 -
Lja1g0506 637 Pfam PPR repeat 102 127 IPR002885 -
Lja1g0506 637 Pfam PPR repeat 406 429 IPR002885 -
Lja1g0506 637 Pfam DYW family of nucleic acid deaminases 546 637 IPR032867 GO:0008270
Lja1g0506 637 Gene3D Tetratricopeptide repeat domain 299 565 IPR011990 GO:0005515
Lja1g0506 637 Gene3D Tetratricopeptide repeat domain 20 76 IPR011990 GO:0005515
Lja1g0506 637 Gene3D Tetratricopeptide repeat domain 182 287 IPR011990 GO:0005515
Lja1g0506 637 Gene3D Tetratricopeptide repeat domain 77 181 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0506 Lja-Chr1 4555088 4559153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0506 12 637 Glycoside Hydrolase AT3G49170 39.685 6.87e-156 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0506 - - lja:Lj1g3v4807720.1 1292.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0506 1 4555088 4559153 Lja1g0506 1 4555088 4559153 ECH