Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0476 ATGGCGGGGACTGAAGCCAAAACCAAGAAATCTGATTCGAAACCCCAAAAGCAGCAGCAGCAACAAGGTGGTGGGAAGAAGAAGGAGGTGAAGAAAGAGACTGGGTTAGGGCTTACGCATAAGAAGGCTGAAAACTTCGGAGAATGGTATTCCGAGGTTGTTGTTAATTCGGAAATGATTGAGTATTATGATATTTCTGGTTGCTATATTCTGAGGCCTTGGTCCATGGCCATATGGGAGATAATGCAAGCTTTTTTTGATCCAGAAATTAAGAAAATGAAGATCAAGAACTGCTACTTCCCTTTGTTTGTGTCTCCTGGAGTTTTGCAAAAGGAGAAGGACCATGTTGAGGGATTTGCTCCAGAGGTTGCTTGGGTGACTAAGTCTGGGGAATCTGAGTTAGAAATTCCTATTGCTATTCGCCCAACTAGTGAAACCGTTATGTACCCCTACTACTCCAAGTGGATTAGGGGGCATCGTGACTTGCCACTGAAACTCAATCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCCACACCATTCATCAGGAGTCGTGAGTTTCTTTGGCAGGAAGGACACACTGCTTTTGCAACCAAGGAGGAAGCAGATGCAGAGGTTCTTGAGATATTAGAATTATATAGGCGTATATATGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGCGCTTGAGAAGTTTGCTGGTGGACTTTACACTACCAGTGTTGAGGCATTTATTCCAAACACAGGTCGTGGTGTACAAGGAGCAACTTCTCATTGTCTGGGCCAAAATTTTGCTGAAATGTTTGAGATTAACTTTGAAAATGAGAAGGGAGAAAAAGCAATGGCCTGGCAAAACTCATGGGCCTATAGTACTCGAACGATTGGGGTGATGGTTATGGTTCATGGTGATGACAAGGGATTAGTGCTTCCTCCTAAAGTAGCATCAGTTCAAGTCATAGTGATTCCCGTGCCTTTCAAAGATGCTAATACTCAAGGAATCTATGATGCTTGTGCTGCAACTGTGAATACATTATGCGAAGCAGGTATTCGTGCTGAGTCAGATACTAGAGATAACTATTCTCCCGGATGGAAGTATTCTCACTGGGAAATGAAAGGCGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTGGCAAATAAGCAGGTTCGTGCTGTTCGTCGTGATAATGGAGCAAAGATAGACATTGCTAATGCAGATTTGGTTGAGGAATTAAAGAAGTTGCTGGATAATATTCAGCAGAATCTTTTTGATGTTGCCAAACAAAAACGAGATGAATGTATTCAGATCATACATACATGGGATGAGTTTATACAAGCTTTGAATGAAAAAAATATGATCTTAGCACCTTGGTGTGATGAGGAGGAGGTGGAAGCAGATGTCAAAGCAAGGACAAGGGGCGAGACGGGAGCAGCTAAGACCCTTTGTAGTCCCTTTGATCAGCCAGAACTCCCAGAAGGCACCAAATGCTTTGCATCAGGAAAGCCTGCGACAAAGTGGTCATACTGGGGCAGAAGTTACTAG 1560 0.4314 MAGTEAKTKKSDSKPQKQQQQQGGGKKKEVKKETGLGLTHKKAENFGEWYSEVVVNSEMIEYYDISGCYILRPWSMAIWEIMQAFFDPEIKKMKIKNCYFPLFVSPGVLQKEKDHVEGFAPEVAWVTKSGESELEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADAEVLEILELYRRIYEEYLAVPVIKGKKSALEKFAGGLYTTSVEAFIPNTGRGVQGATSHCLGQNFAEMFEINFENEKGEKAMAWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPFKDANTQGIYDACAATVNTLCEAGIRAESDTRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRAVRRDNGAKIDIANADLVEELKKLLDNIQQNLFDVAKQKRDECIQIIHTWDEFIQALNEKNMILAPWCDEEEVEADVKARTRGETGAAKTLCSPFDQPELPEGTKCFASGKPATKWSYWGRSY* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0476 519 CDD ProRS_core_arch_euk 45 306 IPR033721 -
Lja1g0476 519 MobiDBLite consensus disorder prediction 1 35 - -
Lja1g0476 519 Gene3D - 317 437 IPR036621 -
Lja1g0476 519 PRINTS Prolyl-tRNA synthetase signature 138 149 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja1g0476 519 PRINTS Prolyl-tRNA synthetase signature 178 189 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja1g0476 519 PRINTS Prolyl-tRNA synthetase signature 168 176 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja1g0476 519 PRINTS Prolyl-tRNA synthetase signature 97 115 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja1g0476 519 TIGRFAM proS_fam_I: proline--tRNA ligase 40 519 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja1g0476 519 SMART ProRS_C_1_2 446 519 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja1g0476 519 SUPERFAMILY Class II aaRS ABD-related 311 438 - -
Lja1g0476 519 Coils Coil 414 434 - -
Lja1g0476 519 Gene3D Bira Bifunctional Protein; Domain 2 39 316 IPR045864 -
Lja1g0476 519 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 78 316 IPR006195 -
Lja1g0476 519 PANTHER PROLINE--TRNA LIGASE, CYTOPLASMIC-LIKE 7 519 - -
Lja1g0476 519 SUPERFAMILY C-terminal domain of ProRS 442 519 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja1g0476 519 Pfam Anticodon binding domain 323 419 IPR004154 -
Lja1g0476 519 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 138 304 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lja1g0476 519 PANTHER PROLYL-TRNA SYNTHETASE 7 519 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja1g0476 519 Pfam Prolyl-tRNA synthetase, C-terminal 446 519 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja1g0476 519 CDD ProRS_anticodon_zinc 312 519 - -
Lja1g0476 519 SUPERFAMILY Class II aaRS and biotin synthetases 44 310 IPR045864 -
Lja1g0476 519 Hamap Proline--tRNA ligase [proS]. 39 519 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lja1g0476 519 Gene3D - 440 519 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0476 Lja-Chr1 4259626 4264417 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0476 K01881 - gmx:100782067 985.711