Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g0475 | ATGGCTAACCCAACACAACCTAATGTTGGGTTCACCCCTTCAAACCCAGACAGACAGGGTCAAAACCCTGACAAGGGTCCAATTCCCCCACCTCTTAGTTTTGCAGCTGCACCTAGATTTCCTCCACCAAAATTACAGTTACATCAAGATCAAGCTTCTCCCCAACCCGCTAAAACCCCGAGCCCAAACCTTGTTTCACCGGCTAATGGGGTTACCACTGGCAGTCCAGTTCCTCACCTGAGCACCCCTCCTGGACCCCCTGTCTTCTCGTCACCCGTCCGTCCTGCTGCTGTTCCGTTTCGCACATCGCCTGCATCACCTCAGCCACTTGCTTTTTCGTCAAGCTCTTCTTTGCCAACGTCATCGTCGCCCCAATATTCCAATGGAGCATTTGATTTGCAGTCCCAAGTTTCTGATAGTATTGCGGACCATGCTCCTGTTGGGGAGTCATCCTTTGTTCTTTTTTCAGCTCATAAGGTACTGAAACAGAAGAAACAAGCTAATGTGCCCAGTCTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTCTCAACAGGCCCTCAGGTAATACAGCGTGATCCCCATCGCTGCCAAAGCTGTGGTGGTTATGCAAATATTTATTGCAACATACTGCTTGGCTCAGGCCAGTGGCAGTGTGTTATATGCCGGAAACTGAATGGAAGTGGTGGTGAGTACGTTGCGGCTAGCAAGGAAGATCTTCACAGATTTCCAGAACTGTCTTCACCCATGGTTGACTATGTTCAAACTGGGAACAAGAGACCTGGTTTTGTTCCAGTTTCAGATTCCAGAATGTCTGCCCCAGTTGTTCTTGTAATAGATGAATGTTTAGATGAGCCTCACTTACACCATCTTCAGAGTTCTTTGCATGCTTTTGTTGATTCTCTCCCTCCAACAACAAGATTAGGAATTGTACTATATGGCCGTACTGTATCAGTGTATGACTTCTCAGAAGAATCAATTGCATCTGCTGATGTGCTTCCTGGGGATAAATCACCAAGTGAAGACTCTTTGAAAGCTTTGATTTATGGTACGGGCATATATTTGTCGCCCATGCATGCTTCATTACCTGTAGCACATTCCATATTTTCATCATTGAGAGCATATAAGTTGAACATACCTGAAGCTTCCAGAGATCGGTGCCTAGGAACTGCTGTGGAGGTTGCTCTTGCTATAATTCAGGGCCCGTCAGATCTGTCCCGAGGGGTAGTCAAAAGGTCAGGGGGTAATAGTAGAGTTATTGTCTGTGCTGGTGGACCGAACACTTATGGGCCTGGATCTGTTCCTCATTCTTTTAGTCACCCTAATTATCCTTATATGGAAAAAACAGCATTGAAATGGATGGAGAATCTGGGTCGTGAGGCTCATCGACAAAATACTGTGGTTGATATTTTATGTGCTGGAACATGCCCTGTAAGAGTTCCTATCTTACATCCTCTCGCAAAAGCATCAGGTGGAGTTTTTATTCTCCACGATGATTTTGGAGAAGCCTTTGGTGTTAATTTGCAAAGGGCATCAGCCAGATCAGCAGGCTCTCATGGACTGTTAGAATTGCGAACATCAGATGATATTCTCATTACTCAAGTTGTGGGTCCTGGGGAAGAGTCACATGTAGACACCCACGAAACGTTTAAAAATGACACTGCTCTTTATATTCAGATGCTAAGTGTTGAAGAAACACAGTGCTTCTCTATCTCCATGGAAACCAAAGGGGATATCAAAAGCGATTTTGTCTTTTTCCAGTTTACTATTCAGTATTCAAATGTATATCAAGCTGATGTGTCCAGGGTCATTACTGTTAGACTGCCAACAGTAGATAGCGTTTCAGGATATCTTGAGAGTGTTCAGGATGAAGTGGCTGCTGTCCTCATTGCAAAGAGAACTCTGTTACGAGCCAAAAACCAATCTGATGCAATTGATATGCGAGCAACAATAGATGAAAGAATTAAGGATATTGCTCTAAAATTTGGCTCCCAACTACCAAAATCAAAACTTCATTGCTTCCCAAAGGAGCTTTCTCTCTTACCTGAGATCCTTTTCCATCTCAGGAGAGGATCGCTATTGGGAAGCATTATTGGCCATGAAGATGAGAGGTCTGTGCTGAGGAACCTGTTTCTGAATGCATCCTTTGATCTATCACTCAGAATGGTGGCTCCTCGTTGTCTAATGCACAGGGAGGGGGGAACTTTTGAGGAGCTACCAGCTTATGATCTTGCAATGCAGTCTGATACTGCTGTTGTACTTGACCAGGGCACTGATGTCTTCATTTGGTTGGGTGCTGAACTTGGAGCAGATGAAGGAAAAAGTGCTGCTGCTTTGGCTGCATGCAGGACATTAGCTGAAGAACTGACTGAATTCCGTTTTCCAGCTCCTCGTATCCTTGCATTCAAGGAGGCTAGCTCCCAAGCTCGATATTTTGTCTCTCGTCTCATACCAGCTCACAAAGATCCTCCTTATGAGCAGGAGGCAAGATTCCCTCAACTCAGGACATTGACACAAGAAGCGCGGACAAAGCTGAAAAGCAGCTTTGTTCACTTCGACGATCCTAGCTTTTGTGAGTGGATGCGAAGTTTGAAAGTGGTGCCACCCCAACCGAGATGA | 2622 | 0.455 | MANPTQPNVGFTPSNPDRQGQNPDKGPIPPPLSFAAAPRFPPPKLQLHQDQASPQPAKTPSPNLVSPANGVTTGSPVPHLSTPPGPPVFSSPVRPAAVPFRTSPASPQPLAFSSSSSLPTSSSPQYSNGAFDLQSQVSDSIADHAPVGESSFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSTGPQVIQRDPHRCQSCGGYANIYCNILLGSGQWQCVICRKLNGSGGEYVAASKEDLHRFPELSSPMVDYVQTGNKRPGFVPVSDSRMSAPVVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRLGIVLYGRTVSVYDFSEESIASADVLPGDKSPSEDSLKALIYGTGIYLSPMHASLPVAHSIFSSLRAYKLNIPEASRDRCLGTAVEVALAIIQGPSDLSRGVVKRSGGNSRVIVCAGGPNTYGPGSVPHSFSHPNYPYMEKTALKWMENLGREAHRQNTVVDILCAGTCPVRVPILHPLAKASGGVFILHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEESHVDTHETFKNDTALYIQMLSVEETQCFSISMETKGDIKSDFVFFQFTIQYSNVYQADVSRVITVRLPTVDSVSGYLESVQDEVAAVLIAKRTLLRAKNQSDAIDMRATIDERIKDIALKFGSQLPKSKLHCFPKELSLLPEILFHLRRGSLLGSIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDTAVVLDQGTDVFIWLGAELGADEGKSAAALAACRTLAEELTEFRFPAPRILAFKEASSQARYFVSRLIPAHKDPPYEQEARFPQLRTLTQEARTKLKSSFVHFDDPSFCEWMRSLKVVPPQPR* | 874 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g0475 | 873 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 185 | 259 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Lja1g0475 | 873 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 62 | 872 | - | - | |
| Lja1g0475 | 873 | Pfam | Sec23/Sec24 helical domain | 625 | 721 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Lja1g0475 | 873 | Gene3D | - | 185 | 248 | - | - | |
| Lja1g0475 | 873 | SUPERFAMILY | Helical domain of Sec23/24 | 624 | 724 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Lja1g0475 | 873 | CDD | gelsolin_like | 726 | 817 | - | - | |
| Lja1g0475 | 873 | Pfam | Sec23/Sec24 zinc finger | 195 | 229 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Lja1g0475 | 873 | Pfam | Sec23/Sec24 beta-sandwich domain | 520 | 611 | IPR012990 | - | |
| Lja1g0475 | 873 | Gene3D | von Willebrand factor, type A domain | 275 | 519 | IPR036465 | - | |
| Lja1g0475 | 873 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 41 | 622 | - | - | |
| Lja1g0475 | 873 | Pfam | Sec23/Sec24 trunk domain | 277 | 502 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Lja1g0475 | 873 | Gene3D | Severin | 738 | 837 | IPR029006 | - | |
| Lja1g0475 | 873 | Gene3D | Sec23/Sec24 helical domain | 613 | 732 | - | - | |
| Lja1g0475 | 873 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 726 | 866 | IPR036180 | - | |
| Lja1g0475 | 873 | MobiDBLite | consensus disorder prediction | 79 | 93 | - | - | |
| Lja1g0475 | 873 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Lja1g0475 | 873 | MobiDBLite | consensus disorder prediction | 23 | 38 | - | - | |
| Lja1g0475 | 873 | CDD | trunk_domain | 269 | 511 | - | - | |
| Lja1g0475 | 873 | SUPERFAMILY | vWA-like | 276 | 507 | IPR036465 | - | |
| Lja1g0475 | 873 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 62 | 872 | IPR037364 | - | |
| Lja1g0475 | 873 | MobiDBLite | consensus disorder prediction | 1 | 130 | - | - | |
| Lja1g0475 | 873 | MobiDBLite | consensus disorder prediction | 48 | 78 | - | - | |
| Lja1g0475 | 873 | MobiDBLite | consensus disorder prediction | 106 | 130 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja1g0475 | - | - | gmx:100781518 | 1548.49 |