Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0459 ATGCTGAAGAAAAGATTGGAGGGAAAGGTGGCTCTAATCACTGGTGCAGCTAGTGGAATTGGGGAAGAGACAGTGAAGCTGTTTGTAGAAAATGGAGCAATTGTTGTAGCAGCTGATGTTCAAGATGAACTAGGTGTTCAAGTTGCAGCTTCAATAGGCTCTGAAAAAGTCACATACCACCACTGCGATGTGAGAGATGAAGAACAAGTTAAGGAAACAGTGAATTTCACCTTGGAAAAACACGGTCGCTTGGACGTGCTTTTCAGCAATGCTGGAGTCATAGGCTCCTTATCGGGAATCCTCGAACTCGATCTGAACGAGTTCGAGAACACCATGGCGACCAATGTTGGTGGTGCAGCCGCAACCATCAAACATTGCGCTCGGGCCATGGTGGAGAAAAACATAAGAGGATCCATCATATGCACGACGAGCGTGGCAGCGTGCGTCGGGGGAGCTGGCCCTCATGGTTACACCGCCTCAAAACACGCGCTTTTGGGGCTGGTGAGATCCGCGTGCGGTGAGCTTGGTGGTTATGGTATCAGGGTTAACTGCATTTCCCCTTTCGGCGTCGCGACGCCACTGGCTTGCAGAGCTTTCAATCTTGAGCCACATCAGGTTGAGGCGAATAGTTGTGACCAGGCTAATCTCAAGGGTGTTGTGTTGAAGGCTCGGCATGTGGCGGAAGCTGCTTTGTTTCTTGCTTCTGATGAAGCTGTTTACATCAGTGGTCATAACTTGGTGGTTGATGGTGGCTTCTCTGTGGTTAATCACAGTTCTTCTTCTTCTACCACACCTTATTATTACCATAATGTAGATGCTGCATGA 825 0.4885 MLKKRLEGKVALITGAASGIGEETVKLFVENGAIVVAADVQDELGVQVAASIGSEKVTYHHCDVRDEEQVKETVNFTLEKHGRLDVLFSNAGVIGSLSGILELDLNEFENTMATNVGGAAATIKHCARAMVEKNIRGSIICTTSVAACVGGAGPHGYTASKHALLGLVRSACGELGGYGIRVNCISPFGVATPLACRAFNLEPHQVEANSCDQANLKGVVLKARHVAEAALFLASDEAVYISGHNLVVDGGFSVVNHSSSSSTTPYYYHNVDAA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0459 274 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Lja1g0459 274 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Lja1g0459 274 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Lja1g0459 274 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Lja1g0459 274 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Lja1g0459 274 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Lja1g0459 274 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 255 IPR036291 -
Lja1g0459 274 Pfam Enoyl-(Acyl carrier protein) reductase 15 253 - -
Lja1g0459 274 Gene3D - 1 262 - -
Lja1g0459 274 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 1 260 - -
Lja1g0459 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Lja1g0459 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Lja1g0459 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Lja1g0459 274 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0459 Lja-Chr1 4070913 4072204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0459 3 254 Miscellaneous Gene Families AT2G29290 32.558 6.86e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0459 - - gmx:100811279 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0459 1 4070913 4072204 Lja1g0459 1 4070913 4072204 ECH