LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g0419	ATGGCTTCTTCCCGTCGCAATAGCAATGGCCGATCACCGCTCGTCAACCAACAGCGTCAAATCACTTCCTTCTTCACCAAATCCCCTTCCCCTTCTCTCTCCAAATCTAACTCAAAACTAAACCCTAATCCCATTTCAAACCCTAACCCTACCAGCCCTAGCACCACCACTCCTTCACCTTCCATTCCCAAACCGCACAAGCCCCTTCTCCTCATCGGCGCGTCTCCTTCACCCTCCCCTTCCCCTTCCCTCTTCCGTCAAGAGGTTGTTGGCAAAAGGGTCAAGGTTTATTGGCCGTTAGACGATGCCTGGTACGAAGGTGTTGTCAAATCTTTTGACAGTCTCACCTCCAAGCACCTGGTTCACTACGACGACGGTGAAGAGGAATCGGTTGATCTTTCCAAGGAGAAGGTTGAGTGGCCTGAGGAAGGCGGCGGCTCCTCTTCGAAGAAGCTGAAACGGCTGCGCCGCGGCGGCTTCCTCGATGTCAGGAAGATGGTGATTGATGATGGTAAAGTAGAAGAAAGCCTCAAAGAAGAAGATGGCAATGACGATGGTGGTGATGATGATTCCAATGATGAGGATTGGGGGAAGAATGCTGTGCTTGAGGAAGCAGTGGATGGTGAGGAAGAAGAGGATGTGGAGTTGGAGGATGAAGGAGACGATGTTGCAGAGAGGGCTAAAGTAAAGCCTAGTGGGAAGGCTGAGCCTAGAAAGCGAAAACAGAGTGCTCCAGAGAAAGTGGAGCCAGTTAAAAAGAGCAAGAGTGGAACTGAAGTTGGTAAGGGAGCTTTCAAGTTGTCAGTGTTGGAGCCTACGCATAATTTGGATATTATAAAGACATCTAATGATGCTGACAATGTTGCAACGGGTGATGCCTCTGAAAGATTTGCACTCCGTGAAGCTCAGAAATTCCGCTTTTTGAGAGAAGATCGCAAGGATGCCAAGCGAAGGCGTCCAGAAGATGAAAATTATGATTCAAGAACCCTGTACTTGCCTCCTGACTTCTTGAGGAGTTTATCAGATGGCCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGACAAAGTTTTGTTTTTCAAGATGGGAAAATTCTATGAGCTTTTTGAGATGGATGCACATGTAGGAGCAAAAGAACTTGACTTGCAGTATATGAAGGGAGAACAGCCTCATTGTGGATTTCCTGAGAAGAATTTCTCAATGAATGTGGAGAAACTTGCGCGGAAGGGTTATCGTGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGTCGAAAGCAGAAGGGCTCTAAAGATAAGGTTGTGAGGCGTGAAATATGTGCAGTGGTTACAAAAGGCACATTAATGGATGGGGAGTTGCTGTCCGCTAACCCTGAAGCTGCCTATTTAATGGCACTGACAGAGCACCCTGAAAACCATCCAAATGAAAATTCAGAGCGTACCTATGGTGTCTGTATAGTTGATGTTACCACAAGCAGAGTCATTCTAGGACAGTTTAAGGATGACTCGGAGTGCAGTGCTTTGTGCTGTATCTTGTCTGAGATCAGGCCGGTTGAAATTGTGAAACCTGCTAAACTGCTCAGTGCTGAAACGGAGAGAGTATTGGTGAAGCATACCAGAAATCCTCTGGTGAATGAATTAATTCCAATTGTGGAGTTCTGGGATGCTGATAAAACTTTGGATCAACTGAAGAGAATTTACAGGCACACTAATGATGCTAGTGTTGAAGATAGTGGAGTAGATTGCCTGCCAGGTGTCTTACTAGAGCTGGTGAAAACTGGTGATGACAGTAGAAGTGCACTTTCAGCACTTGGTGGTGCTCTCTATTATCTGAAACAGGCTTTCCTAGATGAGAGGTTGCTTAGATTTGCACAGTTTGAGTTGCTTCCATACTCTGGTTTTTGCGGCCTTGCTTCAAAACCATACATGGTTCTTGATGCCGCAGCCCTGGAGAATCTTGAGATTTTTGAGAATAGCAGAAATGGAGATTCCTCAGGCACGCTCTATGCCCAGTTAAATCAATGTATTACTGCATTTGGAAAGAGATTGCTAAAGACGTGGCTTGCAAGGCCATTATGCCATGTGGAGTCAATTAAGGAACGCCAGGAAGCTGTTGCAGGTTTGAAGGGAGTTAATCTACCTTCTGCGTTAGAATTTCGAAAAGCATTATCAAAGCTACCTGACATGGAGCGGTTGCTTGCAAGGATCTTCTCTGCTAGTGATGCTATTGGAAGGAATGCTAATAAAGTGGTTCTGTATGAGGATGCAGCAAAGAAGCAACTACAAGAATTTATTTCAGCTCTACGTGGTTGTGAACTAATGGCCCAAGCATGCTCTTCACTCAGGGTTATTTTGAATGATGTTAAATCTAGACATCTTAGTCATGTATTAACACCTGGTAAAGGTCTTCCTGATGTTACTCTGGATCTTAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCAAATAAGTCTGGGCGTGTAGTACCTCATGAAGGAGTTGACGTAGAGTTTGACTCAGCTTGTAAGGCAGTTAAAGAGATTGAGTCCAGTTTATTAAAGCATCTCAAGGAACAAAGGAAATTACTTGGAGACACATCAATCACTTATGTCAATGTTGGAAAGGAGACATACCTATTGGAAGTGCCAGAAAATTTGTGTGGGAATATTCCTCAGTATTATGAGCTGCGTTCATCCAAAAAAGGCTTCTTTAGGTACTGGACTCCAGATATTAAAACATTTTTGAGAGAGCTCTCCCAAGCTGAATCTGAAAAGGAGTCCTTATTGAAGAGTACATTACAGAGATTGATTGGGCGTTTTTGTGAACATCATACTCGGTGGAAGCAGTTGGTGTCTGCAACTGCAGAACTGGATGTTTTGATCAGTTTAGCTATTGCAAGTGACTACAATGAAGGTCCAACATGTAGACCAAGTTTCGCAGGCACGTTGTGTACAAAAGAAGCTCCATACCTCTATGCCAAAAGCTTGGGACACCCAGTCCTTAGGAGTGATTCCTTAGGAAAGGGTTCCTTTGTACCCAATGACATAACCATTGGTGGTCCAAATGATGCTAGCTTTATTCTTCTAACAGGTCCAAACATGGGTGGGAAGTCAACTCTTCTTCGCCAAGTTTGCTTGGCTGTGGTTATGGCCCAGGTAGGGGCTGATGTCCCAGCAGAAAGTTTTGATTTGTCACCTGTCGACCGCATTTTTGTTCGAATGGGTGCCAAAGATAATATTATGGCTGGTCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACAATGCTGTCATCTGCCACTTCTAATTCATTGGTGGCTTTGGATGAGCTTGGGCGTGGCACCTCGACTTCTGATGGACAAGCCATTGCGGAATCAGTATTAGACTATCTTGTGCGGAAGGTTCGGTGCCGTGGATTGTTTTCTACTCACTATCACCGATTAGCTATAGATTATCTCCAAGATCCTCAGGTCCGTCTCTGCCACATGGCATGCCAAGTTGGTGGTGGAATTACTGGTTTGGACGAAGTCACCTTTCTTTACAAGCTGACCACTGGTGCTTGCCCCAAGAGCTATGGTGTTAATGTTGCTCGTTTAGCTGGACTTCCAACTTCTCTGCTTCAGAAGGCTGCTGCCAAGTCCAAAGAATTTGAGGCCACTTATGGTAAATGCAGAAAGGCATCTTCTGAAGCATACTCTTCCAATCAAAATTGGGTTGACGAGATAATAGCTATTATACAAAATTTGAACAAGGCTGCTACAAATTTGAATTGCCAAGATAGCATTTGCGATAGTTCCCTAAGTGAGCTTCAGGGTGAAGCAAGGGAACTATTGCAGAGATGTTAA	3864	0.4459	MASSRRNSNGRSPLVNQQRQITSFFTKSPSPSLSKSNSKLNPNPISNPNPTSPSTTTPSPSIPKPHKPLLLIGASPSPSPSPSLFRQEVVGKRVKVYWPLDDAWYEGVVKSFDSLTSKHLVHYDDGEEESVDLSKEKVEWPEEGGGSSSKKLKRLRRGGFLDVRKMVIDDGKVEESLKEEDGNDDGGDDDSNDEDWGKNAVLEEAVDGEEEEDVELEDEGDDVAERAKVKPSGKAEPRKRKQSAPEKVEPVKKSKSGTEVGKGAFKLSVLEPTHNLDIIKTSNDADNVATGDASERFALREAQKFRFLREDRKDAKRRRPEDENYDSRTLYLPPDFLRSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKQKGSKDKVVRREICAVVTKGTLMDGELLSANPEAAYLMALTEHPENHPNENSERTYGVCIVDVTTSRVILGQFKDDSECSALCCILSEIRPVEIVKPAKLLSAETERVLVKHTRNPLVNELIPIVEFWDADKTLDQLKRIYRHTNDASVEDSGVDCLPGVLLELVKTGDDSRSALSALGGALYYLKQAFLDERLLRFAQFELLPYSGFCGLASKPYMVLDAAALENLEIFENSRNGDSSGTLYAQLNQCITAFGKRLLKTWLARPLCHVESIKERQEAVAGLKGVNLPSALEFRKALSKLPDMERLLARIFSASDAIGRNANKVVLYEDAAKKQLQEFISALRGCELMAQACSSLRVILNDVKSRHLSHVLTPGKGLPDVTLDLNHFKDAFDWVEANKSGRVVPHEGVDVEFDSACKAVKEIESSLLKHLKEQRKLLGDTSITYVNVGKETYLLEVPENLCGNIPQYYELRSSKKGFFRYWTPDIKTFLRELSQAESEKESLLKSTLQRLIGRFCEHHTRWKQLVSATAELDVLISLAIASDYNEGPTCRPSFAGTLCTKEAPYLYAKSLGHPVLRSDSLGKGSFVPNDITIGGPNDASFILLTGPNMGGKSTLLRQVCLAVVMAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATSNSLVALDELGRGTSTSDGQAIAESVLDYLVRKVRCRGLFSTHYHRLAIDYLQDPQVRLCHMACQVGGGITGLDEVTFLYKLTTGACPKSYGVNVARLAGLPTSLLQKAAAKSKEFEATYGKCRKASSEAYSSNQNWVDEIIAIIQNLNKAATNLNCQDSICDSSLSELQGEARELLQRC*	1288

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lja1g0419	1287	Pfam	MutS domain II	467	620	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Lja1g0419	1287	MobiDBLite	consensus disorder prediction	171	258	-	-
Lja1g0419	1287	SUPERFAMILY	DNA repair protein MutS, domain III	651	974	IPR036187	-
Lja1g0419	1287	Pfam	MutS domain V	1033	1223	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Lja1g0419	1287	Coils	Coil	199	219	-	-
Lja1g0419	1287	CDD	TUDOR	91	135	IPR002999	-
Lja1g0419	1287	Pfam	MutS domain I	344	456	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Lja1g0419	1287	Gene3D	-	648	969	-	-
Lja1g0419	1287	SMART	TUDOR_7	86	144	IPR002999	-
Lja1g0419	1287	Gene3D	MutS, connector domain	465	640	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Lja1g0419	1287	MobiDBLite	consensus disorder prediction	205	220	-	-
Lja1g0419	1287	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH6	307	1254	-	-
Lja1g0419	1287	Gene3D	-	86	138	-	-
Lja1g0419	1287	Gene3D	-	980	1258	IPR027417	-
Lja1g0419	1287	Coils	Coil	1273	1287	-	-
Lja1g0419	1287	Gene3D	DNA repair protein MutS, domain I	299	460	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Lja1g0419	1287	MobiDBLite	consensus disorder prediction	1	84	-	-
Lja1g0419	1287	SUPERFAMILY	DNA repair protein MutS, domain I	329	452	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Lja1g0419	1287	SMART	mutATP5	1029	1221	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Lja1g0419	1287	Gene3D	-	814	945	-	-
Lja1g0419	1287	MobiDBLite	consensus disorder prediction	221	256	-	-
Lja1g0419	1287	Pfam	MutS family domain IV	838	929	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Lja1g0419	1287	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	992	1224	IPR027417	-
Lja1g0419	1287	MobiDBLite	consensus disorder prediction	1	45	-	-
Lja1g0419	1287	PIRSF	Msh6	1	1273	IPR017261	GO:0006298\|GO:0030983
Lja1g0419	1287	Coils	Coil	916	936	-	-
Lja1g0419	1287	MobiDBLite	consensus disorder prediction	122	153	-	-
Lja1g0419	1287	SUPERFAMILY	DNA repair protein MutS, domain II	462	663	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Lja1g0419	1287	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	307	1254	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Lja1g0419	1287	Pfam	MutS domain III	654	969	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Lja1g0419	1287	SMART	DNAend	668	1009	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Lja1g0419	1287	MobiDBLite	consensus disorder prediction	46	65	-	-
Lja1g0419	1287	SUPERFAMILY	Tudor/PWWP/MBT	89	131	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g0419	Lja-Chr1	3693404	3702156	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g0419	K08737		-	gmx:100811104	1959.88

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g0419	1	3693404	3702156	Lja1g0419	1	3693404	3702156	ECH