Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0406 ATGGTGAAAATGGCAACATCTCCGTCTTCTTCTCCGGTCACCATAACGGTCTCATCCGGCGGAAAAACAGGGGGAAGCAGAAGCATGGGACTAACAAGTCCGGTACCCCGTGCTTCATTCTCCAACAACCCCAATTCCCCTCTCAGCGCCGCCAGATCAAGCAGAGCTTCCACCGGCGGCGGCGGAATCAGGCGGCTATCAGGTGGAGCCACCACTACCACCACCACCACCACAGACAACAGCAACGGAGAAATCAACCCAGAATTCGTGTCATACACTGTTCATATTCCTCCAACACCAGATCGCAGCGTGCCCTTGTCAACCTCACAGACAAGCCTCCCTGAAGATTGCAAAAACCCTACAAGCTACCTCTCCGGTACGATTTTCACCGGAGGGTTCAACTCCGTGACACGAGGCCATGTAATTGATTGCTCCGAGGTGGAAATCGACAAGCCGCCGCTGAAATCTGGGTTGATTTGTGGGATGAAGGGTTGTGATGAGAAAGCAATGCAAATTAGGGGGAGTGGTCCTTGTGAGTGTGGCTTCAAGATCTGCAAGGATTGTTACATTGAGTGCGGCGGAAACCATGGAGCGGGTCGGTGCCCTGGTTGCAAAGAGCCTTACCACAAGGATGTGAGTGAGAGTGAAGAAGAAGAAGAGGAGGAAGAGGAATCTGAGGGTGAAGATCAAGCTCTGCCGTTACCTTCCATGGCGGAATTCAAATTGGATAAGAGGCTTTCCCTTGTGAAGTCCTTCAAAGCACAGAATCATCCACCTGAATTTGATCACACTCGCTGGCTGTTTGAAACCAAAGGAACCTATGGTTATGGAAATGCTGTGTGGCCTAAAGATGGATATGGTGGTAGCAATGGATACGAACCCCCGCCGGATTTCGGAGAGAGAGCTAGGAGACCCTTGACTCGTAAGGTTGCAGTTTCAGCTGCCATTCTCAGTCCATATAGATTACTTATTCTGCTGCGTCTTGTTGCCCTTGGTTTTTTCCTTACATGGAGGGTTAGACACCCCAATCATGAGGCAATGTGGCTGTGGGGAATGTCCATAACTTGTGAGCTGTGGTTTGCATTTTCATGGCTTCTTGATCAGCTCCCTAAGCTCTGTCCAGTGAATAGAGTCACTGATTTGTCTGTTCTGAAAGAGAGGTTTGAGTCCCCGAACCTCCGCAACCCGAAAGGGCGGTCTGATCTCCCCGGAATTGATGTGTTTGTTTCCACAGCTGATCCTGAGAAGGAGCCTCCTCTTGTCACTGCAAACACCATTCTCTCTATCCTTGCAGTTGATTATCCGGTGGAGAAGGTTGCTTGTTACTTGTCTGATGATGGTGGAGCTCTATTGACATTTGAAGCCCTTGCTGAGACTGCTAGCTTTGCAAGGGTGTGGGTTCCTTTCTGCAGAAAGCATCAAATTGAGCCCAGAAATCCTGAAGCTTATTTTGGGCAGAAGCGTGATTTTCTCAAGAACAAGGTTCGATTGGACTTTGTGAGGGAGAGGAGAAGGGTGAAGAGGGAATATGATGAATTCAAAGTGAGAATAAATTCCTTACCAGAATCCATAAGGAGAAGATCAGATGCTTACAATGCTCATGAGGAGTTAAGAGCCAAGAAGAAGCAGATGGAAGGTGGTTCCAGTATCTCAGAACCCATCAAGGTTCCTAAAGCAACATGGATGTCTGATGGTTCTCATTGGGCAGGAACTTGGGCATCTGCAGAACCAGAACATTCAAGAGGAGACCATGCTGGCATAATTCAGGCAATGTTAGCTCCACCAAATGCAGAACCAGAATTTGGTGCAGAAGCGGATGCAGAGAACTTGATTGACTCAACCGATGTTGATATCAGATTGCCTATGCTTGTATATGTGTCTCGGGAGAAGAGACCAGCATATGATCATAACAAGAAAGCAGGAGCCATGAATGCTCTTGTTCGCACTAGTGCCATCATGTCTAATGGTCCATTCATTCTGAATCTCGACTGTGATCATTACATCTACAACTCCTTGGCCATCAGGGAAGGAATGTGCTTCATGCTTGACAGGGGAGGTGACAGGATATGCTATGTCCAGTTCCCTCAAAGGTTTGAGGGCATTGACCCAAGTGACCGATATGCAAATCACAACACAGTGTTCTTTGATGTGGGAATGAGAGCTTTTGACGGCTTACAAGGTCCAATGTATGTGGGAACAGGCTGCATATTCAGGAGAACAGCTCTTTATGGATTTAGTCCTCCTAGAGCTACAGAACATCGCGGTTGGCTTGGCAGAAAGAAAATTAAGTTGTTTCTGAGAAAGCGCAAGGTGTCAAAAAAGGAAGAAGATGAAGTTGTTGTGCCAATCAATGGTGACCACAATGATGATGATGCAGATATTGAGTCCTTGCTTCTTCCCAAAAGGTTTGGCAACTCTACTTCTCTAGCTGCATCCATTCCTGTGGCAGAGTACCAGGGAAGGTTGCTTCAAGACTTGCAAGGAAGGGGAACACATGGAAGGCCAGCAGGTTCTCTTGCCGTGCCTCGTGAACCATTGGATGCTGCTACTGTTGCAGAGGCGATAAGTGTGATATCTTGTTTCTATGAGGACAAAACTGAATGGGGAAAACGTGTAGGGTGGATATATGGTTCTGTTACAGAAGATGTGGTCACTGGTTACAGAATGCACAATAGAGGGTGGAGATCTGTGTACTGTGTCACCAAAAGAGATGCATTTAGAGGAACAGCTCCCATCAACTTAACAGATAGGCTCCATCAGGTTCTCCGATGGGCAACAGGTTCTGTAGAGATCTTCTTCTCTAGGAACAATGCATTGTTGGCCAGTCCTAGAATGAAGTTCTTACAAAGGGTGGCATATTTCAATGTGGGAATGTACCCTTTCACCTCAGGGTTCCTGATTCTCTATTGCTTTCTTCCTGCACTATCCCTATTCTCAGGGCAGTTTATAGTCCAATCGGTCAATGCAACTTTTCTAGTGTTCTTGCTGGGCATCACAATCACACTGTGCTTGCTTGCACTGCTTGAGATCAAGTGGTCTGGAATCACTCTACATGACTGGTGGAGAAATGAGCAATTCTGGTTGATTGGTGGAACAAGTGCCCACCCTGCTGCTGTTTTACAAGGACTGTTGAAGGTGATAGCAGGAGTAGACATCTCCTTCACCCTGACCTCAAAATCTGCCACTCCAGAAGATGGAGATGATGAGTTTGCTGATTTGTATGAGGTAAAGTGGAGCTTCCTAATGGTCCCTCCAATTACCATTATGATGGTGAATATGATTGCTATTGCAGTAGGAGTGTCCAGGACTCTGTACAGTCCATTTCCACAATGGAGCAGGCTTGTAGGAGGGGTGTTTTTCAGCTTCTGGGTCTTGTGCCATCTTTACCCCTTTGCAAAAGGACTGTTGGGAAGGAGAGGGAAGGTTCCAACAATTGTCTATGTTTGGTCTGGATTGATCTCCATTATTATCTCCATGCTTTGGGTTTACATAAACCCTCCTGCTGGAAGAACACAGGATTACTTGAATTTCCAGTTCCCTTAG 3543 0.4697 MVKMATSPSSSPVTITVSSGGKTGGSRSMGLTSPVPRASFSNNPNSPLSAARSSRASTGGGGIRRLSGGATTTTTTTTDNSNGEINPEFVSYTVHIPPTPDRSVPLSTSQTSLPEDCKNPTSYLSGTIFTGGFNSVTRGHVIDCSEVEIDKPPLKSGLICGMKGCDEKAMQIRGSGPCECGFKICKDCYIECGGNHGAGRCPGCKEPYHKDVSESEEEEEEEEESEGEDQALPLPSMAEFKLDKRLSLVKSFKAQNHPPEFDHTRWLFETKGTYGYGNAVWPKDGYGGSNGYEPPPDFGERARRPLTRKVAVSAAILSPYRLLILLRLVALGFFLTWRVRHPNHEAMWLWGMSITCELWFAFSWLLDQLPKLCPVNRVTDLSVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKVACYLSDDGGALLTFEALAETASFARVWVPFCRKHQIEPRNPEAYFGQKRDFLKNKVRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEGGSSISEPIKVPKATWMSDGSHWAGTWASAEPEHSRGDHAGIIQAMLAPPNAEPEFGAEADAENLIDSTDVDIRLPMLVYVSREKRPAYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLAIREGMCFMLDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVGMRAFDGLQGPMYVGTGCIFRRTALYGFSPPRATEHRGWLGRKKIKLFLRKRKVSKKEEDEVVVPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGRGTHGRPAGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKFLQRVAYFNVGMYPFTSGFLILYCFLPALSLFSGQFIVQSVNATFLVFLLGITITLCLLALLEIKWSGITLHDWWRNEQFWLIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDEFADLYEVKWSFLMVPPITIMMVNMIAIAVGVSRTLYSPFPQWSRLVGGVFFSFWVLCHLYPFAKGLLGRRGKVPTIVYVWSGLISIIISMLWVYINPPAGRTQDYLNFQFP* 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0406 1180 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 106 1174 - -
Lja1g0406 1180 MobiDBLite consensus disorder prediction 213 229 - -
Lja1g0406 1180 Pfam RING/Ubox like zinc-binding domain 164 208 - -
Lja1g0406 1180 MobiDBLite consensus disorder prediction 212 234 - -
Lja1g0406 1180 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 606 753 IPR029044 -
Lja1g0406 1180 MobiDBLite consensus disorder prediction 1 56 - -
Lja1g0406 1180 SUPERFAMILY Nucleotide-diphospho-sugar transferases 420 969 IPR029044 -
Lja1g0406 1180 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 106 1174 - -
Lja1g0406 1180 MobiDBLite consensus disorder prediction 67 86 - -
Lja1g0406 1180 Pfam Cellulose synthase 405 1172 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lja1g0406 1180 MobiDBLite consensus disorder prediction 1 86 - -
Lja1g0406 1180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 224 IPR013083 -
Lja1g0406 1180 SUPERFAMILY RING/U-box 159 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0406 Lja-Chr1 3575246 3579223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0406 37 1180 Glycosyltransferase AT3G03050 65.835 0.0 1532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0406 K00770 - gmx:100804687 2009.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0406 1 3575246 3579223 Lja1g0406 1 3575246 3579223 ECH