Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0403 ATGGAGCGCCTCAGAACAATTTGGACACCTGAGATGGATCGTTATTTCATTGATCTTTTGTTGGAGCAGGTTGGCGATGATGGCAATAGGTTCCATGATCATTTGTCCAGACAAGGTGCATGGAAACACATCTCTTCATTGTTCAATGCAAAGTTCAATTTTCAATACGAAAAAGATGTTATCAAGAACCGCTACAAAACATTGAGGAATTTGCACAGGGATGTTAGTTACATTCTTGCCCAGCCAGGGTTTAGCTGGGATGAAAAGAGGAATATGGTCTCTGCTGATAATCATGTTTGGGATGAATATCTCAAGGTACATCCCAGTGCAAGATCTTGCAGAGTCAAAAGCATTCCCTATTTCAAAGCTTTGTGTACTATATATGGAAATGCAGTGACACAAGAAAAAGGTGATAATGGACAAGTAGGGTCATCTAATGTAGGTGAGGTTGCGGATGAGGTTTTTCATGATATAAAGGTGGATGAAGACTGTGGAATCTCTACCTTGGAAAATGGCACCGGCGATTCTGAACAGGGGGCACCAAAGGCAACAGCAACCTCTTTCCGTACCCGGAATCGGACTTGTTGGCAGCCACCAATGGATCGCTACTTCATTAACCTAATGCTTGCCCATGTGCACAAAGGCAATCATGTTGATGGTGTCTTCAGCAGACAAGCATGGATGGAGATGATTTCATCATTCAATGAAAAGTTTGGTTTTGACTATAGTTTGGAGAATCTTAAAAATCGATACAAAACTCTGCGAAGACAGTATAATTTAATTAGAAGTCTTCTTGATTTGGATGGGTTTGTCTGGGATGAGACGCGCCAGATGGTTACTGCTGATGATTGTGTCTGGCAAGATTATATCAAGGTTTATTCGGATGCACGGCAGTTTATGACGCGACCTTTACCATATTATAAAGCTCTGTGTGTCATATATGACCCGAATTTTGATGGAAAAGAATCTTATCTGGCTCAATATTTAGAGCTTCAAAATGTAGCTGATGTAACGACTGAGAGTCCATGGACTTCTAAAACTGGTCAGTCTCCTAATACATCCAATTCCAATGAAGATCAAAGGCAGTTAGCTCATATTGGACAGAAACAAAAGCGTCAATTGGAAAAGTGTCCAGATTCTACTAGTCCTAAAAAATCGAAGGATGATGAACAAGGCATGGCTATTGCCCTTCATGAGATGGCAACTGTAATTTCTACTCTGTCTACAAATACTAACAATGATAACTCAATATCAATTGAGACTGTCATAAAAGAAGTACAAGCATTGCCTGATATGGATGAAGATCTAGTTTTGGATGCTTGCGATTTCCTGGAGGATGAAAAAAAAGCCAAAACATTTCTGGCACTGAATGCAAAGTTAAGAAAGAAATGGTTGATTAGGAAACTTCGCACACAAGTGTAG 1422 0.4008 MERLRTIWTPEMDRYFIDLLLEQVGDDGNRFHDHLSRQGAWKHISSLFNAKFNFQYEKDVIKNRYKTLRNLHRDVSYILAQPGFSWDEKRNMVSADNHVWDEYLKVHPSARSCRVKSIPYFKALCTIYGNAVTQEKGDNGQVGSSNVGEVADEVFHDIKVDEDCGISTLENGTGDSEQGAPKATATSFRTRNRTCWQPPMDRYFINLMLAHVHKGNHVDGVFSRQAWMEMISSFNEKFGFDYSLENLKNRYKTLRRQYNLIRSLLDLDGFVWDETRQMVTADDCVWQDYIKVYSDARQFMTRPLPYYKALCVIYDPNFDGKESYLAQYLELQNVADVTTESPWTSKTGQSPNTSNSNEDQRQLAHIGQKQKRQLEKCPDSTSPKKSKDDEQGMAIALHEMATVISTLSTNTNNDNSISIETVIKEVQALPDMDEDLVLDACDFLEDEKKAKTFLALNAKLRKKWLIRKLRTQV* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0403 473 Coils Coil 244 264 - -
Lja1g0403 473 MobiDBLite consensus disorder prediction 364 390 - -
Lja1g0403 473 Pfam Myb/SANT-like DNA-binding domain 196 289 IPR024752 -
Lja1g0403 473 Pfam Myb/SANT-like DNA-binding domain 8 103 IPR024752 -
Lja1g0403 473 PANTHER EXPRESSED PROTEIN 179 335 - -
Lja1g0403 473 PANTHER EXPRESSED PROTEIN 2 150 - -
Lja1g0403 473 PANTHER EXPRESSED PROTEIN 359 471 - -
Lja1g0403 473 MobiDBLite consensus disorder prediction 339 390 - -
Lja1g0403 473 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 179 335 - -
Lja1g0403 473 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 2 150 - -
Lja1g0403 473 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 359 471 - -
Lja1g0403 473 MobiDBLite consensus disorder prediction 339 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0403 Lja-Chr1 3560956 3563742 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0403 - - adu:107492453 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0403 1 3560956 3563742 Lja1g0403 1 3560956 3563742 ECH