LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g0398	ATGGAGTCATGTGAGTGTATAGACACTCATTATCCTCCAGATGAGCTTCTTGTGAAGTATCAGTATATCTCTGATGTGTTGATTGCCCTTGCGTATTTCTCGATTCCTGTGGAGCTTATTTATTTTGTTCAGAGGTCTGCTTTCTTCCCCTATAGATGGGTGCTTATGCAGTTTGGTGCTTTTATCGTTCTCTGCGGGGCGACTCATTTCATAAACCTGTGGACGTTCACCGCGCATACTAAGGCTGTTGCTGTTGTCATGACAATATCCAAAGTGTCGTGCGCGATCGTGTCGTGCGCGACCGCGCTGATGCTTGTCCATATTATTCCTGATTTGTTGAGTGTGAAAACTCGTGAGTCGTTCCTTAAGCACAAGGCGGAGGAGCTTGACAGGGAGATGGGGCTTATTCTTACTCAAGAAGAAACCGGAAGGCATGTTAGAATGTTGACTCATGAAATTAGGAGCACCCTTGACAGGCATACCATTCTGAAGACTACTCTCGTGGAGCTGGGGAGTACTCTAGGGTTGGAGGAATGTGCATTGTGGATGCCATCAAGAAGTGGTCTGAATTTGCAGCTTTCCCATACTTTAACCTACAATGTACAGGTTGGGTCTACTGTGCCGACAAACCTTCCTATTGTCAATGAAGTTTTCAATAGCCCTAGAGCTACGCGGATACCGCACACCTGTCCACTGGCCAGGATCAGACCTCTTGTTGGAAGATATGTGCCGCCCGAAGTTGTTGCTGTTCGGGTGCCGCTTTTACATCTGTCAAATTTCCAGATTAATGATTGGCCTGATCTTTCAGCAAAAAGCTATGCAATCATGGTTCTCATCCTCCCTACTGATAGTGCTAGAAAATGGCGAGATCATGAGTTGGAACTTGTTGATGTTGTTGCAGATCAGGTAGCTGTTGCCCTTTCACATGCTGCTATTTTGGAGGAATCTATGCGAGCCCGAGATCAACTCATGGAGCAGAATGTAGCTTTAGATTTAGCTCGGCGAGAGGCAGAAATGGCAATTCATGCTCGCAATGATTTCCTTGCTGTCATGAATCATGAAATGAGAACCCCAATGCATGCAATTATAGCATTGTCATCACTTCTCTTGGAGACTGAACTGACACCAGAGCAGAGGGTTATGATAGAGACAGTATTGAAGTGTAGTAATGTTTTGGCGACACTTACCAATGATGTTCTAGATCTTTCTCGACTGGAAGATGGTAGCCTTGAATTAGAAATGGGAAAACTCAACCTTCATGGTGTTTTGGGAGAGGTCGTTGAATTGATAAGGCCTATAGCATCTGTGAAGAAATTACCCATCACTTTAATTTTGGCACCTGATCTGCCTACTTTTGCCATTGGTGATGAAACGCGACTCATGCAAACTCTTCTAAATGTTGTGGGTAATGCTGTCAAATACACCAAGGAGGGCTATGTTTCTATAAGAGTATCTGTTGCAAAACCAGAATCTTTACAGGATTGGCGACCTCCTGAGTTTTACCCAGCATCGAGTGATGGCCATTTCTACATGCGAGTCCAGGTTAAGGATTCTGGATGTGGCATTCTCCAACAAGATATTCCTCATCTCTTTACCAAGTTCACTCAGTCTCGGAGTGGACCAGTTCGATCTAGCAATGGTGCAGGTCTTGGGCTAGCCATTTGTAAAAGATTTGTAAATCTCATGGGAGGTCACATATGGATTGAGAGTGAGGGCCTTAATAAAGGATGCACAGCTACATTCATAGTCAAACTTGGGATTTGTGGCAATCCAGATCCATCTGATCATCAAGTTGCAAACAGAGGGCAAGCATACAGTGGAAGTGGTGGCCTTGCCAGATTTAAACCCTTTCTCAAAGATGATGACGACACAGGGTTTTCTACTAGACGCAATCAAAGAAGTTTCTAA	1908	0.4444	MESCECIDTHYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQRSAFFPYRWVLMQFGAFIVLCGATHFINLWTFTAHTKAVAVVMTISKVSCAIVSCATALMLVHIIPDLLSVKTRESFLKHKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGSTLGLEECALWMPSRSGLNLQLSHTLTYNVQVGSTVPTNLPIVNEVFNSPRATRIPHTCPLARIRPLVGRYVPPEVVAVRVPLLHLSNFQINDWPDLSAKSYAIMVLILPTDSARKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKCSNVLATLTNDVLDLSRLEDGSLELEMGKLNLHGVLGEVVELIRPIASVKKLPITLILAPDLPTFAIGDETRLMQTLLNVVGNAVKYTKEGYVSIRVSVAKPESLQDWRPPEFYPASSDGHFYMRVQVKDSGCGILQQDIPHLFTKFTQSRSGPVRSSNGAGLGLAICKRFVNLMGGHIWIESEGLNKGCTATFIVKLGICGNPDPSDHQVANRGQAYSGSGGLARFKPFLKDDDDTGFSTRRNQRSF*	636

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g0398	635	SUPERFAMILY	Homodimeric domain of signal transducing histidine kinase	329	409	IPR036097	GO:0000155\|GO:0007165
	Lja1g0398	635	SMART	gaf_1	158	317	IPR003018	GO:0005515
	Lja1g0398	635	PRINTS	Bacterial sensor protein C-terminal signature	546	564	IPR004358	GO:0016310\|GO:0016772
	Lja1g0398	635	PRINTS	Bacterial sensor protein C-terminal signature	511	525	IPR004358	GO:0016310\|GO:0016772
	Lja1g0398	635	PRINTS	Bacterial sensor protein C-terminal signature	529	539	IPR004358	GO:0016310\|GO:0016772
	Lja1g0398	635	SMART	HisKA_10	343	408	IPR003661	GO:0000155\|GO:0007165
	Lja1g0398	635	Gene3D	-	138	308	IPR029016	-
	Lja1g0398	635	Pfam	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	455	585	IPR003594	-
	Lja1g0398	635	ProSiteProfiles	Histidine kinase domain profile.	350	587	IPR005467	-
	Lja1g0398	635	Pfam	GAF domain	158	307	IPR003018	GO:0005515
	Lja1g0398	635	CDD	HisKA	341	404	IPR003661	GO:0000155\|GO:0007165
	Lja1g0398	635	Pfam	His Kinase A (phospho-acceptor) domain	344	408	IPR003661	GO:0000155\|GO:0007165
	Lja1g0398	635	SMART	HKATPase_4	455	587	IPR003594	-
	Lja1g0398	635	PANTHER	TWO-COMPONENT SENSOR HISTIDINE KINASE	1	634	-	-
	Lja1g0398	635	Gene3D	-	309	407	-	-
	Lja1g0398	635	Gene3D	-	408	588	IPR036890	-
	Lja1g0398	635	PANTHER	ETHYLENE RESPONSE SENSOR 1	1	634	-	-
	Lja1g0398	635	SUPERFAMILY	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	397	585	IPR036890	-
	Lja1g0398	635	SUPERFAMILY	GAF domain-like	158	319	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g0398	Lja-Chr1	3516552	3521308	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g0398	1	599	Miscellaneous Gene Families	AT2G40940	76.962	0.0	941

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g0398	K14509		-	gmx:100794417	1144.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g0398	1	3516552	3521308	Lja1g0398	1	3516552	3521308	ECH