Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0394 ATGGCATCTGCACGCTCCATGTCAGTTTCTCTGGAATGCGTGAACGTGTGCAATCTATGGAGAGGGGATGGAAATGGAAGACATGACTGTAGTCTTCTACCGTGCGCCTGGAAAGCTCCCAGGTTCCTTACTGGGTTTCTTGCCACCACGGCTCATCCCCATCACTCTTCCATTGGGCTCAACAATGGAAGAAGGAACCGGTATAATTTTGCATGCGAAGCCTTTAGTATAGTAGATTCATATCCTGATGAAGCACTTGATATCATACTTCTTGAAGGATTCTCTACAGCTATATTGTCCAGAGCTGCTCCTAAGAGATGGCAGATATGTTGTTCGTCAGCCTTTTCGGATACTTCCATTGAGTTTTCCCCTGAAAGTTTATGGGAGGATCTTAAACCTGTCATTTCATACCTGTCCCAGAAAGAACTGGAGTTAGTCCGTAAGGCTTTTATGTTGGCATTTGAAGCTCATGATGGACAGAAAAGACGCAGTGGTGAACCCTTCATCATTCATCCAGTCGAGGTTGCACGAATTCTCGGAGAACTTGAACTTGATTGGGAGTCGATTGTTGCTGGGTTACTTCATGACACAGTTGAGGATACTGATGTTGTTACTTTTGAGAGGATAGAGGATGAATTTGGCGCTACTGTGCGACACATTGTGGAAGGAGAGACAAAGGTGTCAAAGCTAGGAAAATTGAAGTATAAGAATGAAAATGATTCCGTTCAAGATGTGAAAGCAGAGGATCTTCGACAAATGTTTCTTGCTATGACAGAGGAGGTTCGTGTTATTATTGTCAAGTTAGCAGACAGGTTACATAACATGCGCACTCTATCACATATGCCTCCACATAAACAGAATAGCATCGCGATGGAGACATTACAGGTGTTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATAAAGTCAGAACTAGAAAATCTGTCATTTATGTACACAAATGCCGAAGATTATGCTAAGGTGAAGAGGAGAGCTGCAGACCTATACAAAGAACATGAAAAAGAACTTTTGGAGGCAAACAAAATATTGGTGAAGAAAATCCAAGATGATCAGTTCTTAGAACTTTTGACAGTTAAAACAGAAGTCCGTGCTGTGTGTAAAGAGCCATACAGTATCTATAAAGCTGTTCTCAAATCAAAAAGTTTGATCAGCGAGATTAACCAAATTGCACAGCTTCGTATAATTATTAAACCAAAACCATGCATTGGGGTTGGGCCTTTATGCAGTCCACAGAAGATTTGCTATCATGTTCTAGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTATGAAGGACTATATTGCAACCCCTAAACCTAATGGCTATCAGAGTCTTCAAACCACTGTGATTCCTTTTCTGTATGAGAGCATGTTTAGGCTTGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGTAGAGAATTTGTCACCAGCTTGGTTGGAAGTGCGATGCCTGGTGGTAAAAGCCCAAGAGGGAAGGCAGTGTGTCTTAACAATGCCAACATTGCACTCAGAATTGGCTGGCTCAATGCGATTAGAGAGTGGCAAGAAGAGTTTGTAGGCAACATGAGTTCTAGGGAATTTGTGGACACTATTACAAGAGATCTGTTGGGCAGTCGTGTCTTTGTTTTCACACCCAGGGGAGAGATTAAGAATCTTCCCCAGGGTGCTACGGTCATTGACTATGCTTATATGATACACACTGAAATTGGCAACAAGATGGTGGCTGCTAAGGTCAACGGTAATCTTGTTTCTCCTGCACGTGTACTTGCGAATGCTGAAGTTGTGGAGATAATCACATATAATGCTCTTTCCAGTAAATCAGCTTTTCAGAGGCATAAGCAATGGTTGCAACATGCTAAAACGCGTAGTGCAAGGCACAAAATAATGAAGTTTCTGAGGGAGCAGGCTGCACGTTCTGCTGCTGATATCACCACAGAAGCAGTCAATGACTTTGTCACTGATTCTGGAGAGGATAGTGAATCAGAAGAACAGTCAAATAGTTCTAGTGATTCGAAACATACTTGGGGGAAAATGTTTGTGAATGGTGTGGAAATATCAACTCCAGAGAGAAGTGAGACTATCCTCCAAAGTACGAATGGAAGTGTTTGGACCCCTAAGGTCAATGGAAAACATAATAAGCATGTGCAGCATGTAAGTGTTAAGGGCAATGAGGAGATGTTTCTGCAGGGAAGTCATATTGCCAAGATGATTCAAGTTAACTTGCCAAAATATAAGGAAGTGCTGCCAGGTATAGAAAGTTGGCAGGCCCTGAAAATTACATCCTGGCACAATATAGAAGGGCACTCCGTCCAGTGGTTATCTGTAGTATGCATAGACCGCAGAGGCATAATGGCAGAGGTCACTACAGCATTGGCCACAGCAGACATAACCATATGTTCTTGTGTGGCTGAGATTGATAGAGGAAGGGGAATGGCTGTTATGTTATTTCATGTAGAAGGAAATTTAGAAAATTTGGTGATTGCTTGCTCTAAAGTAGATTTAATACTGGGCGTTTTGGGATGGTCTACCGGTTGCAGCTGGCCAAGCTTGATGGAAGACCGTGGCGTACTCGAATGCTAG 2646 0.4267 MASARSMSVSLECVNVCNLWRGDGNGRHDCSLLPCAWKAPRFLTGFLATTAHPHHSSIGLNNGRRNRYNFACEAFSIVDSYPDEALDIILLEGFSTAILSRAAPKRWQICCSSAFSDTSIEFSPESLWEDLKPVISYLSQKELELVRKAFMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIVAGLLHDTVEDTDVVTFERIEDEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQNSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRAADLYKEHEKELLEANKILVKKIQDDQFLELLTVKTEVRAVCKEPYSIYKAVLKSKSLISEINQIAQLRIIIKPKPCIGVGPLCSPQKICYHVLGLIHGIWTPIPRSMKDYIATPKPNGYQSLQTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTSLVGSAMPGGKSPRGKAVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPARVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSAADITTEAVNDFVTDSGEDSESEEQSNSSSDSKHTWGKMFVNGVEISTPERSETILQSTNGSVWTPKVNGKHNKHVQHVSVKGNEEMFLQGSHIAKMIQVNLPKYKEVLPGIESWQALKITSWHNIEGHSVQWLSVVCIDRRGIMAEVTTALATADITICSCVAEIDRGRGMAVMLFHVEGNLENLVIACSKVDLILGVLGWSTGCSWPSLMEDRGVLEC* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0394 881 Pfam Region found in RelA / SpoT proteins 375 491 IPR007685 GO:0015969
Lja1g0394 881 Gene3D Beta Polymerase, domain 2 323 477 IPR043519 -
Lja1g0394 881 SUPERFAMILY ACT-like 794 845 IPR045865 -
Lja1g0394 881 SUPERFAMILY HD-domain/PDEase-like 132 321 - -
Lja1g0394 881 MobiDBLite consensus disorder prediction 675 696 - -
Lja1g0394 881 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 881 - -
Lja1g0394 881 Gene3D - 794 856 - -
Lja1g0394 881 Pfam HD domain 149 306 - -
Lja1g0394 881 SMART RelA_SpoT_2 375 497 IPR007685 GO:0015969
Lja1g0394 881 Gene3D Hypothetical protein af1432 126 321 - -
Lja1g0394 881 Coils Coil 330 350 - -
Lja1g0394 881 CDD HDc 166 297 IPR003607 -
Lja1g0394 881 ProSiteProfiles HD domain profile. 168 275 IPR006674 -
Lja1g0394 881 Pfam TGS domain 562 621 IPR004095 -
Lja1g0394 881 CDD TGS_RSH 563 621 IPR033655 -
Lja1g0394 881 SUPERFAMILY TGS-like 549 621 IPR012676 -
Lja1g0394 881 CDD NT_Rel-Spo_like 346 485 IPR007685 GO:0015969
Lja1g0394 881 Gene3D - 555 630 IPR012675 -
Lja1g0394 881 SUPERFAMILY Nucleotidyltransferase 326 496 IPR043519 -
Lja1g0394 881 ProSiteProfiles TGS domain profile. 558 621 IPR004095 -
Lja1g0394 881 SMART hd_13 164 284 IPR003607 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0394 Lja-Chr1 3466599 3474278 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0394 178 501 EF-hand Containing Proteins AT3G17470 29.275 6.14e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0394 K00951 - gmx:100814134 1526.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0394 1 3466599 3474278 Lja1g0394 1 3466599 3474278 ECH